Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium884g00001 ATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCTAGGAATGAGTGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTACAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAACTGCGATGCTGATGAGATGGTTAGAATGGTTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAAACTTCGACCTCGTATGAGCCAAATAGTTGGAGCC 333 0.4595 MGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNECLVDWARPLLARALQEENFDNLVDPRLQKNCDADEMVRMVTCAAACVRHSSKLRPRMSQIVGA 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium884g00001 111 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 110 IPR047117 -
Vium884g00001 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Vium884g00001 111 Pfam Protein tyrosine and serine/threonine kinase 6 109 IPR001245 GO:0004672|GO:0006468
Vium884g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 1 110 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium884g00001 Vium-Chr884 5 1450 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium884g00001 1 111 Trihelix Transcription Factor Family AT5G38560 66.071 1.36e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium884g00001 PK_Tyr_Ser-Thr 2.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium884g00001 - - vum:124823964 226.868