Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8847g00002 ATGGCATCACCTTCCCTCACAAACCATATCTCTGCCAACATAATTCTATATGGTTATTTTGTTAAGTGTGTTGTTGGTGCCTCTATTTTGATGTTGTTATTCGGTTCACTTTGTTATTGGTTGCTAGTAGCTCGCAGGTCTCGTCAAGGCAAAGGCTCTGCAAGTGAATCAACTAGTTCTTCTTGCAGAGTGTTTACATTCCAAGAGCTCCAACAAGCAACAAACAATTTTCAAGAGTGTTTTCTCCTTGGCAATGGTGGTTTTGGTAAAGTCTACAAGGGAAAACTTGAAAATGGGACAGAAGTAGCAGTTAAAAGAGCCAACCCTGAATCAAAACAAGGCTTGACCGAGTTCCAAAACGAGATTCGTTTGTTATCAAAACTTCAACACCCTCATATTGTGTCTCTTATAGGCTACTGCCACGAAGGAGAGGAAATGGTTATCGTGTATGAGTACATGGCCAATGGCCCTTTGAGCAAATGGCTCTACGAACCAAACGAGGCACCACTCTCGTGGAAGCAGCGACTTGAAATTTGCATTGGAGCTGCCAGAGGGCTTCACCATCTTCACACTGCCACTGCTGAAGGCATAATTCATAGAGATGTGAAAACTGACAACATTCTCTTGGATGGGAACTTTGTTGCCAAAGTATCAGACTTTGGCATCTCAGAAAACGGGCCTTCTTCTCTAGATGAGAGCCATGTTGTGATTAGTGTGAAGGGCACTTTTGGTTACATAGATCCTGAGTACTTCAGAAGTAGCCATCTAACTGAAAAATCAGATGTGTATTCATTTGGGGTGGTTCTGACAGAAGTAATCTCTGGTAGACCTGCTTTAGACCATAGTCTTCCAACAGAGAAAATCAGTTTAGCATCATGGGCATTGGATTCTGAACTAAATGGTATCATAGACCCAAATCTGGTTGGCAAAGTGAGAGTTTCTTCTCTTGAAAAGGTGTGGGGAGTGGCTAAAAGGTGCCTAGCTGAGAATGGGATCAAGAGACCACCAATGGGTTTTGTCTTGTGCTGTTTAGAAGATGCTCTCCATCTTCAACTCAGCAACATAAAAAATGAGAAAACTTCGTTTTTAGATTGCAATTTGCAACATAATGACAGAAGTGTTACAATTATTGGTCTTTGA 1140 0.4167 MASPSLTNHISANIILYGYFVKCVVGASILMLLFGSLCYWLLVARRSRQGKGSASESTSSSCRVFTFQELQQATNNFQECFLLGNGGFGKVYKGKLENGTEVAVKRANPESKQGLTEFQNEIRLLSKLQHPHIVSLIGYCHEGEEMVIVYEYMANGPLSKWLYEPNEAPLSWKQRLEICIGAARGLHHLHTATAEGIIHRDVKTDNILLDGNFVAKVSDFGISENGPSSLDESHVVISVKGTFGYIDPEYFRSSHLTEKSDVYSFGVVLTEVISGRPALDHSLPTEKISLASWALDSELNGIIDPNLVGKVRVSSLEKVWGVAKRCLAENGIKRPPMGFVLCCLEDALHLQLSNIKNEKTSFLDCNLQHNDRSVTIIGL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8847g00002 379 Gene3D Phosphorylase Kinase; domain 1 41 152 - -
Vium8847g00002 379 FunFam receptor-like protein kinase FERONIA 43 152 - -
Vium8847g00002 379 Pfam Protein tyrosine and serine/threonine kinase 83 278 IPR001245 GO:0004672|GO:0006468
Vium8847g00002 379 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 346 - -
Vium8847g00002 379 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Vium8847g00002 379 ProSiteProfiles Protein kinase domain profile. 77 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8847g00002 379 CDD STKc_IRAK 83 341 - -
Vium8847g00002 379 SUPERFAMILY Protein kinase-like (PK-like) 53 344 IPR011009 -
Vium8847g00002 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vium8847g00002 379 Gene3D Transferase(Phosphotransferase) domain 1 153 370 - -
Vium8847g00002 379 SMART serkin_6 77 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8847g00002 Vium-Chr8847 35910 37106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8847g00002 31 351 Receptor kinase-like Gene Family AT5G61350 55.287 2.54e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium8847g00002 PK_Tyr_Ser-Thr 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8847g00002 - - vun:114184690 661.759