LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8847g00001	ATGGTGATGATGAAACTTGTAAAGTGGGTTTCCTTTGTTTTTGTTGTTTATTTGTTTTTGGTGAATGGTTCGTCTGCTACATTCACTCCTAGTGATAATTATCTAATTACTTGTGGTTCCTCTCAAAGTATCACTTTCCAAGATCGCACCTTCGTCCCCGATTCACAGCATTCTTCACCGGAGTTGAAAACCTCTAATTCTGTTGTTGCTAGTTCAAATTCTAGCGTCCCTTTCCCAATATATCAATCAGCTAGGATTTTCACTGAGAAAGCGTCTTATAGGTTTAAGGTTGATGAAGGTAGGCACTGGCTGAGGCTATATTTTTCCCCTCTTACCAACTCAGCCCATAATTTGACTGAAGCTGTTATAACAGTGGTCACTGATGATTTTGTCCTCTTGTGCAACTTCTCCTTTAGGAACTACAATGGTTCATATATGTTTAGGGAGTATGCCATCAATGTTACCTCTGATACCTTAACTGTCACCTTCATTCCTTCAAATGGTTCGGCAGTAGCTTTCGTCAATGCAATTGAAGTTGTATCAATGCCAAATGACTTGTTTGTTGATCAGGCATTGGCCCTTAACCCAACCGCACCATTCAATGGCCTTTCTGAACTTGCTTTTGAGACTGTTTATCGCTTAAACATGGGAGGTCCCTTGCTCACTCCCCGGAATGACACCCTGGGAAGGACTTGGGAGAATGATCAGAAATACCTCCATGTGAATAGTTCAGTCACTAATGTGTCTGTTAACCCTTCCAGCATTAAGTATCATCCGGGTGTTACACCTGAGACAGCACCCAATTGGATCTATGCCACTTCTGAAGCAATGGGGGATGCAAATGTGGCCAATTCAAATTTCAACATCACTTGGGTCTTTACTGTGGATCCAAACTTCTCCTATTTCATTCGGGTGCACTTTTGTGATATTTTTAGCAAGTCTCTCAACACTCTAGTATTCAATTTGTTCATCAATACTGACATAGCTCTTGGAAGCCTTGACCTCTCATCCATAACTAATGATTTGTCTGTGCCTTACTATAAGGACTTTGTTTCCAATGCCTCAGCTGACTCCAACATTTTGACAGTGAGTGTTGGTCCTGATACAATGGCAGATATCACAAATGCCACTATGAATGGATTGGAGGTCATAAAGATCAGTAATTCATTCAAGAGCTTGGATGGACTTTCTTCAGTTGAGAGTCTCCTTCCCAGTTCATCATCAAGTAAAAGCAAGACGGGGATAATAGTAGGTTCTTCTATTGGAGTTGTGGCTGCCATAGCTTTGCTTGGTTTGTGTTACTGCTGCATGGTGAGATACAAATCAAAGTCTACTGAACAAGGTCATTCTTGGTTGCCTTTACCCTTGTATGGAAACTCTCAGACCATGACAAAAATGTCAACAACATCTCAGAAGAGTGCAACTGCAAGCTGCATTTCTTTAGCTTCGTCAAATCTCGGACGGATCTTCACTGTTCAAGAGATCCTCGATGCAACCAACAAGTTTGATGAGAAGCTGCTTCTTGGTGTCGGTGGCTTTGGAAGGGTTTATAAAGGAACACTTGAAGATGGGACCAGTGTCGCTGTTAAAAGGGGGAACCCCAGATCGGAACAAGGTCTTGCCGAATTCAGAACAGAAATTGAGATGTTATCCAAGCTTCGCCATCGCCACCTTGTGTCCCTCATTGGCTATTGTGATGAGAGATCCGAAATGGTTCTTGTATATGAATACATGGCGAATGGACCTCTCAGGAGTCATTTATATGGAACAGACCTACCACCACTGTCATGGAAGCAACGGCTCGAAATTTGCATTGGAGCAGCAAGAGGTCTTCATTATCTCCACACGGGAGCATCTCTAAGCATAATTCACCGCGATGTAAAGACAACTAACATCCTCTTAGATGATAACTTTGTTGCCAAGGTTGCTGACTTTGGCCTCTCCAAAACTGGTCCTGCTCTTGATCAGACTCATGTGAGCACTGCTGTCAAAGGTAGTTTCGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTAACAGAGAAATCAGATGTGTATTCGTTTGGAGTAGTTTTGATGGAAGTGTTGTGCACAAGACCAGCCTTGAACCCTGTCCTTCCTAGGGAACAGGTTAACATAGCTGAGTGGGCAATGACATGGCAGAAGAAAGGAATGCTTGATCAGATCATGGATCAGAATCTAGTGGGGAAAGTAAATCCTGCTTCTCTGAAGAAGTTTGGGGAAACAGCTGAGAAGTGCTTGGCCGAGTATGGAGTGGATAGGCCTTCTATGGGTGATGTTTTGTGGAATCTTGAATATGCTTTGCAGCTTCAAGAGACCTCATCAGCACTCATGGAGCCTGAAGATAACAGCACAAACCACATCACTGGAATTCAGTTGACTCGTCTTGAGCCTTTTGACAACAGTGTTAATATGATTGATGGGGGCAACTCTTTCACAGATGATGATGCAGAAGATGCTGCCACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGCGGAAGATGA	2532	0.4293	MVMMKLVKWVSFVFVVYLFLVNGSSATFTPSDNYLITCGSSQSITFQDRTFVPDSQHSSPELKTSNSVVASSNSSVPFPIYQSARIFTEKASYRFKVDEGRHWLRLYFSPLTNSAHNLTEAVITVVTDDFVLLCNFSFRNYNGSYMFREYAINVTSDTLTVTFIPSNGSAVAFVNAIEVVSMPNDLFVDQALALNPTAPFNGLSELAFETVYRLNMGGPLLTPRNDTLGRTWENDQKYLHVNSSVTNVSVNPSSIKYHPGVTPETAPNWIYATSEAMGDANVANSNFNITWVFTVDPNFSYFIRVHFCDIFSKSLNTLVFNLFINTDIALGSLDLSSITNDLSVPYYKDFVSNASADSNILTVSVGPDTMADITNATMNGLEVIKISNSFKSLDGLSSVESLLPSSSSSKSKTGIIVGSSIGVVAAIALLGLCYCCMVRYKSKSTEQGHSWLPLPLYGNSQTMTKMSTTSQKSATASCISLASSNLGRIFTVQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTSVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMVLVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGASLSIIHRDVKTTNILLDDNFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTRLEPFDNSVNMIDGGNSFTDDDAEDAATSAVFSQLVNPRGR	843

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8847g00001	843	ProSiteProfiles	Protein kinase domain profile.	502	775	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8847g00001	843	FunFam	receptor-like protein kinase FERONIA	463	577	-	-
	Vium8847g00001	843	Gene3D	Phosphorylase Kinase; domain 1	460	577	-	-
	Vium8847g00001	843	FunFam	Receptor-like protein kinase FERONIA	207	388	-	-
	Vium8847g00001	843	Pfam	Protein tyrosine and serine/threonine kinase	507	768	IPR001245	GO:0004672\|GO:0006468
	Vium8847g00001	843	FunFam	Receptor-like protein kinase FERONIA	578	794	-	-
	Vium8847g00001	843	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	622	634	IPR008271	GO:0004672\|GO:0006468
	Vium8847g00001	843	MobiDBLite	consensus disorder prediction	52	72	-	-
	Vium8847g00001	843	Gene3D	Transferase(Phosphotransferase) domain 1	578	797	-	-
	Vium8847g00001	843	ProSitePatterns	Protein kinases ATP-binding region signature.	508	530	IPR017441	GO:0005524
	Vium8847g00001	843	CDD	STKc_IRAK	508	773	-	-
	Vium8847g00001	843	Gene3D	-	33	183	-	-
	Vium8847g00001	843	Gene3D	-	206	388	-	-
	Vium8847g00001	843	FunFam	Putative receptor-like protein kinase	33	183	-	-
	Vium8847g00001	843	Pfam	Malectin-like domain	36	385	IPR024788	-
	Vium8847g00001	843	PANTHER	OS07G0166700 PROTEIN	488	779	IPR045272	GO:0004714\|GO:0006468
	Vium8847g00001	843	SUPERFAMILY	Protein kinase-like (PK-like)	481	773	IPR011009	-
	Vium8847g00001	843	SMART	serkin_6	502	775	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8847g00001	Vium-Chr8847	4607	8109	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8847g00001	4	843	Receptor kinase-like Gene Family	AT3G46290	51.817	0.0	828

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vium8847g00001		Malectin_like	2.3e-34	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8847g00001	-		-	gmx:100809700	1376.69