Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium883g00001 GTGAGTTTTACTCCCAAAGTTTGGTTTTGGCTCTTCGTTAACGCATTGGTTGGAATGACTCTGGCTCAAGGCTTATTCTATTATGGGCTGAGAGATACTTCAGCTACTTACTCTGTTAACTTTCTCAACATGGTTCCAATATGCACATTCCTCACCTCAGTCATTTGCAGATTGGAGAAATTAGGGCTGAAAAATTGGAGTGGTAGAACTAAGTGTGCAGGGGCAATTTTGTGTGTTGGTGGAGCATTACTTACCAGTCTTTACAAAGGCAAACAATTTTATCTTTTTCATCATAGTCATCATGCTCAAACTAATGTTGCAGCACAACCAACTCACATGCTTCGGGGTACTTTCCTTTTGATCGGCAGCTGCTTCTCATACACAGCTTGGTTTCTTCTACAAGTCCAATTGCTTAAAGTATTTCCACTTAGGTATTGGGCAACAATGCTATCATGCGTTATAGCAGCAATTCAAGCAGGAATCGTAGGGGTCTGCATAGATTCTAGTAAAGCTGCTTGGAGATTAGAGTGGAATCTACAACTGCTCACCATAATCTACTCTGGAGCACTGGCTACTGCTGCTACATTCTGCATACTATCTTGGGCAATAACAATCAAAGGACCTACTTATCCTTCGATGTTCAATCCCCTCTCTCTTATTTTTGTGGCCTTTTCAGAAGCTCTCATTCTCGGACAACCACTGACCATTGGAACGTTGTTGGGCATGGTTTTGATCATAGTTGGGTTGTACTCCTTCTTGTGGGGAAAAAGAAATGAGAAAATGGGCATCACTCAACAGCCAATCGTTGCAGCTGCAGAAGTGTCAAATATCTCTGATTTGATTGCTGGGGCAGAATCAACAGCTACAGTAGTGCCAAGTTCTTCACCGCTGAATACTCTGGATTTGGAACATGATGCTCCTCATAAAAATTGA 933 0.4202 VSFTPKVWFWLFVNALVGMTLAQGLFYYGLRDTSATYSVNFLNMVPICTFLTSVICRLEKLGLKNWSGRTKCAGAILCVGGALLTSLYKGKQFYLFHHSHHAQTNVAAQPTHMLRGTFLLIGSCFSYTAWFLLQVQLLKVFPLRYWATMLSCVIAAIQAGIVGVCIDSSKAAWRLEWNLQLLTIIYSGALATAATFCILSWAITIKGPTYPSMFNPLSLIFVAFSEALILGQPLTIGTLLGMVLIIVGLYSFLWGKRNEKMGITQQPIVAAAEVSNISDLIAGAESTATVVPSSSPLNTLDLEHDAPHKN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium883g00001 310 SUPERFAMILY Multidrug resistance efflux transporter EmrE 177 257 - -
Vium883g00001 310 Pfam EamA-like transporter family 3 85 IPR000620 GO:0016020
Vium883g00001 310 Pfam EamA-like transporter family 115 252 IPR000620 GO:0016020
Vium883g00001 310 SUPERFAMILY Multidrug resistance efflux transporter EmrE 4 89 - -
Vium883g00001 310 PANTHER WAT1-RELATED PROTEIN 9 264 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium883g00001 Vium-Chr883 4 1483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium883g00001 4 256 Nodulin-like Gene Family AT1G09380 32.692 2.00e-47 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium883g00001 - - gmx:100792281 484.952