Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8837g00001 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAGCCAACAATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAAGATCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTTCAATCCTTTGACGAAAATATCTTTCTCGAACATCACCATGATTTTCTCTTACTTCACCCCTCTCTAGCCGACCCCGGATTCTCAAAAAACCTTCACGTTGCTCCCGAAATCCCCGCAATTCCCTCCTCCTTCGGACAAGGTGGCGCCGCCCCTATGGACCACACTACAAGAAAGAGGTCCTGCAAGAGAGATCGCCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGCTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAAACCAAGCAAAAGTCGAAATCAAACAACTTGCTAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTCGTGAGTGGAGTTAACGAGGAGCAAGAGAGGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACCATCGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAATAGAGAAGATGAGGACTCGAAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGCGCACCTTCCCGAGGCCGAAGAACCAACTTCTCACGCTAAGGAACATTTGGAGGACATGGCGCGCCATGAAGACAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTCAAACAATCCGCATCATTCACGGAAGTAGTTCAATCTATCCATCATACAAAAAAAGGGCTATGA 1089 0.472 MYSSNTSLNGNDLLSYPSQQFCFRPFSFESNPTNSSKDQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDFLLLHPSLADPGFSKNLHVAPEIPAIPSSFGQGGAAPMDHTTRKRSCKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEQERETPNMKRRTSKVCRKSAFNTIDKESREKARERARERTIEKMRTRRVLAADASNLNRLSSWNPFETVEDSAGTQSQSVNHPSLDAHLPEAEEPTSHAKEHLEDMARHEDNSLVIMNKWSPTMIFNSLKQSASFTEVVQSIHHTKKGL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8837g00001 362 MobiDBLite consensus disorder prediction 208 229 - -
Vium8837g00001 362 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 104 326 IPR005333 GO:0003700
Vium8837g00001 362 MobiDBLite consensus disorder prediction 282 297 - -
Vium8837g00001 362 MobiDBLite consensus disorder prediction 99 124 - -
Vium8837g00001 362 ProSiteProfiles R domain profile. 239 256 IPR017888 -
Vium8837g00001 362 MobiDBLite consensus disorder prediction 209 224 - -
Vium8837g00001 362 MobiDBLite consensus disorder prediction 282 311 - -
Vium8837g00001 362 Pfam TCP family transcription factor 119 259 IPR017887 -
Vium8837g00001 362 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8837g00001 Vium-Chr8837 3350 4940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8837g00001 115 253 TCP Transcription Factor Family AT3G18550 43.671 2.42e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium8837g00001 TCP 7.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8837g00001 - - vra:106767828 592.423