Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8831g00002 ATGAGCGAGTGGGAGGCTAAATTTAGTAGTTTGGTGAAGCTTATGATCAAGATTTCTGTGCATAATAAATACAGGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTGAAGTCCGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGGCAATAAGTAATCTGAAAGCTAATGCAGCTGGGTTAACTCAACAAAACAATGCAAAGCCTGTTTCAGATGCCAACATTCCCAAGGCTAAACCAGAACATCCTTTGGGATCACAATCGAAACTTCCAGAAAGTTCACGAGAAGTGTCTAAACCTCAATCTTCGTCAGTGCTTCCACCAGGTTTTTTTGATGACAATGATTCGGGAAAGAAAAGTTCTGACCATTTAGCAGACTCTGATTTAGGTAGAAAACCTGCGGTTTCTGCTCAAAATCAGGCGTTAAACTTCAAGAAGGAGAAAGGTCATTTTCATGACAATAGTGCTGCAGAGTCAAATGTTAGCGAGGCCTCAACGGAGAGTAAGCAGACCTCAGTTAATAGTACTGATACAGAGATCAAGCAAGTAAAAGGGAGTCTGCCTGAAGGATTTTTTGACAATAAGGAAGCTGATTTGCGTGCCCGTGGCATAAAGCTTGTAAAGCCAGATGTCAAAGACGAGTACAAGGAATTTGAGAAGTTGATTCAAGAAGATTTGCAGGAGGTTGACAACAGGTTGGAGGAAGAAGAGATTGATGCAGCCGAAATGATAGAGGAAGCTGAATCTGTAGAGCAGAAGATCTTCAGGGAGAAAGTGGAAATGTTGAAGAAGAGGAGATTGGATCTAAAAGCTGCTAATGCTGCAAAGCGTAATAAATCATCTGAGGTTGTAGCCAAGGAATCTACACACGAAGAGTCATCCAGTGATGATGAAAGTGAAGAAAATTTTGCCGTGGATTGGAGAGCACAACACTTGTGA 966 0.4151 MSEWEAKFSSLVKLMIKISVHNKYRYNEFDQPVCRVCDVVLKSESLWDAHQVSRKHREAISNLKANAAGLTQQNNAKPVSDANIPKAKPEHPLGSQSKLPESSREVSKPQSSSVLPPGFFDDNDSGKKSSDHLADSDLGRKPAVSAQNQALNFKKEKGHFHDNSAAESNVSEASTESKQTSVNSTDTEIKQVKGSLPEGFFDNKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDNRLEEEEIDAAEMIEEAESVEQKIFREKVEMLKKRRLDLKAANAAKRNKSSEVVAKESTHEESSSDDESEENFAVDWRAQHL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8831g00002 321 MobiDBLite consensus disorder prediction 281 321 - -
Vium8831g00002 321 MobiDBLite consensus disorder prediction 67 141 - -
Vium8831g00002 321 Coils Coil 53 73 - -
Vium8831g00002 321 MobiDBLite consensus disorder prediction 281 302 - -
Vium8831g00002 321 MobiDBLite consensus disorder prediction 124 138 - -
Vium8831g00002 321 PANTHER UNCHARACTERIZED 25 321 IPR040050 GO:0003676|GO:0005681|GO:0008270
Vium8831g00002 321 Gene3D Classic Zinc Finger 25 65 - -
Vium8831g00002 321 MobiDBLite consensus disorder prediction 96 118 - -
Vium8831g00002 321 Pfam Zinc-finger of C2H2 type 34 56 - -
Vium8831g00002 321 SUPERFAMILY beta-beta-alpha zinc fingers 20 66 IPR036236 -
Vium8831g00002 321 MobiDBLite consensus disorder prediction 164 191 - -
Vium8831g00002 321 MobiDBLite consensus disorder prediction 158 191 - -
Vium8831g00002 321 Coils Coil 228 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8831g00002 Vium-Chr8831 6592 10529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8831g00002 25 321 C2H2 Transcription Factor Family AT3G02860 51.316 7.74e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8831g00002 K13104 - gmx:100808515 447.588