Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8811g00005 ATGGAAGGGCTCCAAGAAGGCTTTGTTGTAAAAGGGGGCATAAAATTGCCGATTGGGTTCAGGTTTCGTCCCACAGATCAAGAGCTTCTCCTTCACTACCTCAAGAAGAAGGCCTTTTCTCAACAGTTACCTGCTTCGGTCATTCCAATCTGTGATGTCTTTCAGTCTGAGCCATGGCTGCTTCCTGGTGATTTGAGGGAAAAAAGGTACTTTTTTAGCAATTGTGGAAAAGTGAACAAGAGAAGTGCAGGTTCAGGTTGTTGGAAATGTGTTGGAAAAGAAAATGAAATAAGGGTTTGTGAAAACAATGAAGTAATTGGGATGAAGAAAACAATGATGTTCTGCAAAGGTTCCCATGAAACAAGAACTCGCTGGGTCATGCACGAATTGCGTCTTCTAACTTCCTACCCATATCATCAGATGGCAGTGGCAGATTTTGCTGTGTATGTCATATTTCAGAAAAGGAAGAAGATGACAAAAGCATCTCAGAAGAGACCCTTTTGTAGCAGCAAACTTCAGAGAGTACATGATGTTGAAGCTAGCATAATAGATTTTGAAATGGAATTTGGCAACGATAATATAGTGCTTCCGCCACCTTCTTCCCCATGTTGA 612 0.415 MEGLQEGFVVKGGIKLPIGFRFRPTDQELLLHYLKKKAFSQQLPASVIPICDVFQSEPWLLPGDLREKRYFFSNCGKVNKRSAGSGCWKCVGKENEIRVCENNEVIGMKKTMMFCKGSHETRTRWVMHELRLLTSYPYHQMAVADFAVYVIFQKRKKMTKASQKRPFCSSKLQRVHDVEASIIDFEMEFGNDNIVLPPPSSPC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8811g00005 203 Gene3D NAC domain 25 160 IPR036093 GO:0003677|GO:0006355
Vium8811g00005 203 ProSiteProfiles NAC domain profile. 16 154 IPR003441 GO:0003677|GO:0006355
Vium8811g00005 203 PANTHER NAC TRANSCRIPTION FACTOR 56 16 162 - -
Vium8811g00005 203 Pfam No apical meristem (NAM) protein 17 132 IPR003441 GO:0003677|GO:0006355
Vium8811g00005 203 SUPERFAMILY NAC domain 10 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8811g00005 Vium-Chr8811 83728 86929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8811g00005 8 160 NAC Transcription Factor Family AT5G13180 42.236 1.14e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium8811g00005 NAM 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8811g00005 - - vun:114181461 345.51