Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium880g00017 ATGATGGTTAGATCCTGTTGGAAACCAATTGTTGATGGTGATGAAGGAGATGGGAGTGGGAGAGTTGATGGACTTCTATGGTACAAGGATTTGGGAAGCCATCTTTATGGGGAATTCTCAATGGCTGTAGTTCAGGCAAATAGTTCGTTAGAGGATCGAAGTGAACTTGAATCTGGACCTTTGAGTTCCAACCCCTTGGGCCCTCAAGGGACCTTTATAGGTGTCTACGATGGCCATGGTGGAAACGAGGCCTCACAGTTTGTCAGTGACAATCTCTTCTGCAATCTCAAAAGGCTTGCAGCCGAACATCAAGGTATGTCAGAACATGTAATCAAAAGGGCATATTCAGCAACAGAGGAGAGTTTTCTGTCTCTTGTGAAGAAACAGTGGCTGAGTAAGCCTCAGATTGCATCTACGGGAACTTGTTGCTTGGTGGGGGTAATTTGCAATGGAATGATATATATTGCAAATTCTGGAGACTCCCGGGTGGTGTTAGGAAGAGTAGAGAGAGCAACAAGGGAAACAGAAGCTATACAATTATCTACAGAACACAATGTTAACCAAGAAACAGTGAGAGATGAACTTCGCTCAAAGCACCCTTTTGATTCACAAATCGTGGTATTGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATCGGGGACGCATATCTGAAGAAAGCAGAATTCAACAGGGATCCTCTACCAGCAAAATATAGGCTGGTAGAAACATTCTTCAGGCCAATTCTTAGTTGTGAGCCATCAACATCATCCCACACACTCCATCCAGATGATCAATTTCTGATATTTGCTTCTGATGGTTTATGGGAGCATCTTACAAACCAAGAGGCTGTTAACATAGTCAACAACAACCCACCAAACGGAATTGCCAGAAGACTTGTGAAAGCTGCACTTAGAGAAGCTGCTAAGAAGTGTGAAATGAGGCTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGAAGGCACATCCATGATGACATTACAGTTATTGTGGTATTTCTTAACTCCAGAAGTGAGAATACCTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGCCTCTGCCAATTCCTAG 1113 0.4376 MMVRSCWKPIVDGDEGDGSGRVDGLLWYKDLGSHLYGEFSMAVVQANSSLEDRSELESGPLSSNPLGPQGTFIGVYDGHGGNEASQFVSDNLFCNLKRLAAEHQGMSEHVIKRAYSATEESFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYIANSGDSRVVLGRVERATRETEAIQLSTEHNVNQETVRDELRSKHPFDSQIVVLRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPAKYRLVETFFRPILSCEPSTSSHTLHPDDQFLIFASDGLWEHLTNQEAVNIVNNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNSRSENTSLCGSPLSIKGGASANS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium880g00017 370 PANTHER PROTEIN PHOSPHATASE 36 344 IPR015655 GO:0004722|GO:0006470
Vium880g00017 370 SMART PP2C_4 32 344 IPR001932 -
Vium880g00017 370 Coils Coil 307 327 - -
Vium880g00017 370 Pfam Protein phosphatase 2C 57 315 IPR001932 -
Vium880g00017 370 CDD PP2Cc 36 346 IPR001932 -
Vium880g00017 370 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Vium880g00017 370 FunFam Phosphatase 2C family protein 27 355 - -
Vium880g00017 370 Gene3D - 29 354 IPR036457 -
Vium880g00017 370 ProSiteProfiles PPM-type phosphatase domain profile. 35 346 IPR001932 -
Vium880g00017 370 SUPERFAMILY PP2C-like 48 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium880g00017 Vium-Chr880 125779 128247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium880g00017 2 365 PP2C-type Phosphatase Gene Family AT3G12620 65.217 1.54e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium880g00017 K01102 - gmx:100819870 705.286