Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium880g00006 ATGGCTACTCAAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCCTGGGAACCAAACAAGCCATTGAGCATTGAGGACGTTCAGGTGGCTCCGCCGCAAAATGGAGAGGTCCGAATCAAAATTCTCTACACTGCTCTGTGTCACACCGATGCTTACACGTGGAGCGGCAAGGATCCAGAAGGTCTTTTTCCATGTATACTGGGTCATGAGGCTGCAGGGATTGTGGAAAGTGTTGGAGAAGGTGTTACTGAAGTTGAGGTTGGTGATCATGTGATACCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGTAAATCTGGGAAAACGAATCTGTGTGGGAAAGTTCGAGCTGCAACTGGAGTAGGGGTGATGTTGAGCGATCGCAAAAGTCGCTTCTCTGTTAACGGAAAACCCCTCTATCATTTTATGGGAACTTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCCAAGATTCATCCCAAAGCTCCTTTGGACAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAAAAGGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTAGCAGAGGGTGCAAAAGCTGTTGGTGCATCAAGGATTATTGGCATAGATATTGATAGCAATAAGTTTGAAAGAGCAAAGAACTTTGTAGTGAACGAATTTCTTAATCCAAAAGAACACTGA 750 0.4547 MATQGQVITCKAAVAWEPNKPLSIEDVQVAPPQNGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVEVGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSVNGKPLYHFMGTSTFSQYTVVHDVSVAKIHPKAPLDKVCLLGCGVPTGLGAVWNTAKVEKGSIVAIFGLGTVGLAVAEGAKAVGASRIIGIDIDSNKFERAKNFVVNEFLNPKEH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium880g00006 249 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 249 - -
Vium880g00006 249 SUPERFAMILY GroES-like 3 197 IPR011032 -
Vium880g00006 249 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 248 IPR036291 -
Vium880g00006 249 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vium880g00006 249 PANTHER ALCOHOL DEHYDROGENASE 5 249 - -
Vium880g00006 249 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Vium880g00006 249 Gene3D - 1 238 - -
Vium880g00006 249 FunFam alcohol dehydrogenase 1-like isoform X1 18 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium880g00006 Vium-Chr880 34954 39411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium880g00006 10 178 Monolignol Biosynthesis Gene Families AT1G72680 28.235 3.17e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium880g00006 K00121 - gmx:100793008 469.544