Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium880g00005 ATGGCGCTGTGGATGGAAAAGGGTTCGGAGCCCTTAACAGAAAGCGAGAAGGCTGACCTTGAAGCCATTGCTGCACTCAAAGAGTCAGCTGCCTTTGAATTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTATTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAGGCCTTGGGTGACTCTGAGACCTCTATTCTTTTTTCAAATAGAGCCCATGTTAATTTGCTGCTAGGAAATCTTAGACGTGCTCTCGTAGATTCTCAAGAGGCCCTCAAGTTGTGCCCTTCAAATATTAAGGCAATTTATAGAGCTGCCAAAGCTTCCCTTTCACTAAATATGTTGGCTGAAGCAAGAGAATATTGTCTGAAGGGTCTTCAGTTGGACCCCAATAATGAGGATTTGAAGAAGCTTGACAGACAGATTGGTCTGAAGATATCAGAGAAGGAAAAACATGAGGCTCAAGTCTAGAAGGCTGTTGCAGAGGCAAAAGACCTTGTGTCTGCTATAGAATATAGAGGCTTGAAGATCGGAAAGGCAATGTATCGAGAACTTACTGGATTAAAGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCTGTTGTACTTCTGTATGCAGAGGTTATGTCTAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCGGTTCACCTTGATATGATATTTGCAGAAGATCAGCCTTTGTCATGGGATGTTGAAAACAACTACAAACGTGAATTTATTGAATTATACTATGAGGCTGGTTCTGGACATTGTCTATCGAAGGAAAAACTTCTTTGTTGTCTATTAGAAGGAACTGCAGCTGCTCACAGTGATAGTCTTGGTGATGAAGAGAAAGATGCTGTTGAGGATTATAAGCAACAAACGGGTTCCCCAAAATGGATCAAAGTGAATGAAAGGAGGACACTCCATGATGTTCTCAAAGAGCCTAATTTCATCATTCTTGGAATCCCAGTCTTCTATGTTATATCGAAGAGATCCAGCTTTTACAACAAGTTCAAAGCTGGAAAGTGGGCTCCTCCAAATGTATGA 1083 0.4118 MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALGDSETSILFSNRAHVNLLLGNLRRALVDSQEALKLCPSNIKAIYRAAKASLSLNMLAEAREYCLKGLQLDPNNEDLKKLDRQIGLKISEKEKHEAQVXKAVAEAKDLVSAIEYRGLKIGKAMYRELTGLKKPVLDKSNILHWPVVLLYAEVMSSDFIEDFCETDMFSVHLDMIFAEDQPLSWDVENNYKREFIELYYEAGSGHCLSKEKLLCCLLEGTAAAHSDSLGDEEKDAVEDYKQQTGSPKWIKVNERRTLHDVLKEPNFIILGIPVFYVISKRSSFYNKFKAGKWAPPNV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium880g00005 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 357 - -
Vium880g00005 360 CDD CTWD_Cns1-like 170 352 - -
Vium880g00005 360 Coils Coil 150 162 - -
Vium880g00005 360 Coils Coil 164 175 - -
Vium880g00005 360 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Vium880g00005 360 SUPERFAMILY TPR-like 22 160 IPR011990 GO:0005515
Vium880g00005 360 Pfam Cns1/TTC4 Wheel domain 201 268 IPR044059 GO:0051879
Vium880g00005 360 Gene3D Tetratricopeptide repeat domain 27 172 IPR011990 GO:0005515
Vium880g00005 360 SMART tpr_5 71 104 IPR019734 GO:0005515
Vium880g00005 360 SMART tpr_5 31 66 IPR019734 GO:0005515
Vium880g00005 360 SMART tpr_5 105 138 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium880g00005 30 161 Calmodulin-binding Proteins AT3G25230 31.469 6.57e-07 49.3