Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8808g00008 ATGCAGTGTCCAAAGAAGAGTAGAACTTTCCTCATGGGATTTCATGACTTTGTTTTGCTATTCTGTTCATTTTGGTGTGTCTTTTTTGTAAGTAGTTGCAGTGCTCAGATGCAGTCCTCTCAGACCCAAGTGCTTCTTCAGTTGAAAAAGCACTTGGAGTACCCAAGACAATTGGAAATATGGAGAGATCGTTGGACAGATCTTTGCTCTGTTTCTTCTTCTGGGCAAGTGAATGTCACATGCAAGGACAATTTTGTCACTGAGCTCTCCATCTTGGGTGATAAGCCAACCGAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCAAACACTATCAGATAGCTTCTCCATGGACTCTTTTGTGGCTACAGTGGCAAGGTTAACCAGCCTGAGAGTGCTTAGTCTTGTCTCTTTGGGCATGTGGGGACCACTTCCTGATAGAATTCACAGACTCTATGCACTTGAACATCTGGATTTGAGTTTCAATTATCTTTATGGATCAATCCCTCCTAAGATTTGCACAATGGTGAACCTTCAAACTCTTGGATTGGGTGATAACTTCTTCAATGGAACAATCCCGAACGTGTTCAATTCATCAAGCAATCTCTCAGTTCTTAGTTTGAGGAATAACATGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCTCTTTAAAAGACATTGACATGTCAAGCAATCAAATATCAGGGATGCTGCAAGATTTTAGTGCTTTGAGTAGCTTGGAACAGCTAGATTTAGGAGAAAACAAATTAGAGTCTTTCCTGCCAGCAATGCCAAAAGGGTTGATTAGTCTTTTCCTCGGAAGAAATTCCTTCTCAGGTGAAATTCCCAAGCGCTATGGTCAACTTAACAGGCTTCAGAAGCTTGATGTTTCCTTCAATGCACTCACTGGCACTGCTCCTGCTGAACTTTTCTCTCTGCCAAACATCAGTTACTTGAATTTGGCTTCCAACATGTTGAATGGACCACTGCAAAGTCACCTAAAATGTAGCAGCCAACTTACATTTGTTGACATATCATACAATAGGTTAGTGGGGGACTTACCTTCTTCACTGAGCACTAGATCAGATAATAGAGTCGTTAAGAGTGACGGAAACTGTTTATCTGGGGGAGTGCAGCATCAGCATTCAGTATCCTACTGCACAGAAGCTCATGTCAAGAAGAAATCATATAGAGTTGGAATTTTTGTTGGTGTCATTGTAGGAGTTCTTTTGATCTCTGTGGTTTTGGCTTTGACCATTGTCATAACTTGTAAGAAGTTCTTCCTTCAAGGTGTGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCAGCTACGCGGCAGGGTTCTCCTCTGAGCTTGTGACAAATGCAAGGTATATTTCTGAAATTGCAGAGTTAAGCAGAGAGGACCTCCCCACATGTAGGTCTTATTCTTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGATAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAGAGGAAAACTGCAGAGTGGGATACAGATTGTAATAAGGTCCCTGCCTGTGTCAAAAAAGTATTCAGTTAGAAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTCCGTCACCCTCATTTGGTATCCCTTCTTGGTCACTGCATTGATGGTGTTGTAGGAGAGAATAATGAGACAAATGTCTTTCTAATTTATGAATATGTGCCAAATGGGACTTTTCAAACGTATCTCTCTGGACATAGTTCTGGCAAGGTTTTCAACTGGTCTGAGCGATTATCAGTACTAATCAACATTGCTAAGGCTGTCCACTTCCTACACACTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGAGTGACAATATCTTGCTGAGTGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAAGCTGATGCATGTGGGGTAAAAGGAGAAAGTCCTAATTCGTGGCAAATGAAAATGTTAGAGGATGATGTGTATAGCTTTGGATTCATACTACTGGAGGCACTGGTTGGACCTTCAGTATCAGCTGAAAGAGTAACAGCTGTGTCGAATGTAATGGCAACTTTCAATAGTCAGGATGGGTGGAAAGGGATTGTGGACCCAGTTGTGCAAGCTACTTGCTCAAAAGAATCTCTTTTTGTTGTGATTTCCATAACAAATAAATGCATATCTCCTGAGTCATGGAACCGACCATCCATTGAGGATGTTCTTTGGAACCTTCAGTATGCTTCTCAAATTCAGGCAACAGATGATGGATGA 2313 0.4112 MQCPKKSRTFLMGFHDFVLLFCSFWCVFFVSSCSAQMQSSQTQVLLQLKKHLEYPRQLEIWRDRWTDLCSVSSSGQVNVTCKDNFVTELSILGDKPTEGRDFDGFAIPNQTLSDSFSMDSFVATVARLTSLRVLSLVSLGMWGPLPDRIHRLYALEHLDLSFNYLYGSIPPKICTMVNLQTLGLGDNFFNGTIPNVFNSSSNLSVLSLRNNMLKGPFPPSILSVTSLKDIDMSSNQISGMLQDFSALSSLEQLDLGENKLESFLPAMPKGLISLFLGRNSFSGEIPKRYGQLNRLQKLDVSFNALTGTAPAELFSLPNISYLNLASNMLNGPLQSHLKCSSQLTFVDISYNRLVGDLPSSLSTRSDNRVVKSDGNCLSGGVQHQHSVSYCTEAHVKKKSYRVGIFVGVIVGVLLISVVLALTIVITCKKFFLQGVSEQHLLHKTVQDSSYAAGFSSELVTNARYISEIAELSREDLPTCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLQSGIQIVIRSLPVSKKYSVRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGENNETNVFLIYEYVPNGTFQTYLSGHSSGKVFNWSERLSVLINIAKAVHFLHTGMIPGFFKNRLKSDNILLSENWMAKLSDYGLSIISEEADACGVKGESPNSWQMKMLEDDVYSFGFILLEALVGPSVSAERVTAVSNVMATFNSQDGWKGIVDPVVQATCSKESLFVVISITNKCISPESWNRPSIEDVLWNLQYASQIQATDDG 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8808g00008 770 Gene3D Ribonuclease Inhibitor 38 270 IPR032675 -
Vium8808g00008 770 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 38 269 - -
Vium8808g00008 770 Gene3D Ribonuclease Inhibitor 271 403 IPR032675 -
Vium8808g00008 770 Gene3D Transferase(Phosphotransferase) domain 1 577 769 - -
Vium8808g00008 770 SMART LRR_typ_2 247 270 IPR003591 -
Vium8808g00008 770 SMART LRR_typ_2 224 246 IPR003591 -
Vium8808g00008 770 SMART LRR_typ_2 292 316 IPR003591 -
Vium8808g00008 770 SMART LRR_typ_2 152 176 IPR003591 -
Vium8808g00008 770 SUPERFAMILY L domain-like 40 382 - -
Vium8808g00008 770 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 577 770 - -
Vium8808g00008 770 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Vium8808g00008 770 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 271 395 - -
Vium8808g00008 770 Pfam Protein tyrosine and serine/threonine kinase 500 755 IPR001245 GO:0004672|GO:0006468
Vium8808g00008 770 ProSiteProfiles Protein kinase domain profile. 494 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8808g00008 770 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 381 - -
Vium8808g00008 770 SUPERFAMILY Protein kinase-like (PK-like) 477 759 IPR011009 -
Vium8808g00008 770 Gene3D Phosphorylase Kinase; domain 1 456 576 - -
Vium8808g00008 770 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Vium8808g00008 770 Pfam Leucine rich repeat 178 237 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8808g00008 Vium-Chr8808 72284 76964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8808g00008 19 706 Miscellaneous Gene Families AT5G14210 49.571 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium8808g00008 PK_Tyr_Ser-Thr 5.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8808g00008 - - gmx:100802978 1271.91