Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8808g00004 ATGCATTTACTTCAGGCAGGTTTTCCATTGGGTTGTTTACACGAGCAAGCTGCTCCTTGCTCCTTGATGCAGTGTCCAAAGAAGAGTAGAACTTTCCTCATGGGATTTCATGACTTTGTTTTGCTATTCTGTTCATTTTGGTGTGTCTTTTTTGTAAGTAGTTGCAGTGCTCAGATGCAGTCCTCTCAGACCCAAGTGCTTCTTCAGTTGAAAAAGCACTTGGAGTACCCAAGACAATTGGAAATATGGAGAGATCGTTGGACAGATCTTTGCTCTGTTTCTTCTTCTGGGCAAGTGAATGTCACATGCAAGGACAATTTTGTCACTGAGCTCTCCATCTTGGGTGATAAGCCAACCGAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCAAACACTATCAGATAGCTTCTCCATGGACTCTTTTGTGGCTACAGTGGCAAGGTTAACCAGCCTGAGAGTGCTTAGTCTTGTCTCTTTGGGCATGTGGGGACCACTTCCTGATAGAATTCACAGACTCTATGCACTTGAACATCTGGATTTGAGTTTCAATTATCTTTATGGATCAATCCCTCCTAAGATTTGCACAATGGTGAACCTTCAAACTCTTGGATTGGGTGATAACTTCTTCAATGGAACAATCCCGAACGTGTTCAATTCATCAAGCAATCTCTCAGTTCTTAGTTTGAGGAATAACATGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCTCTTTAAAAGACATTGACATGTCAAGCAATCAAATATCAGGGATGCTGCAAGATTTTAGTGCTTTGAGTAGCTTGGAACAGCTAGATTTAGGAGAAAACAAATTAGAGTCTTTCCTGCCAGCAATGCCAAAAGGGTTGATTAGTCTTTTCCTCGGAAGAAATTCCTTCTCAGGTGAAATTCCCAAGCGCTATGGTCAACTTAACAGGCTTCAGAAGCTTGATGTTTCCTTCAATGCACTCACTGGCACTGCTCCTGCTGAACTTTTCTCTCTGCCAAACATCAGTTACTTGAATTTGGCTTCCAACATGTTGAATGGACCACTGCAAAGTCACCTAAAATGTAGCAGCCAACTTACATTTGTTGACATATCATACAATAGGTTAGTGGGGGACTTACCTTCTTCACTGAGCACTAGATCAGATAATAGAGTCGTTAAGAGTGACGGAAACTGTTTATCTGGGGGAGTGCAGCATCAGCATTCAGTATCCTACTGCACAGAAGCTCATGTCAAGAAGAAATCATATAGAGTTGGAATTTTTGTTGGTGTCATTGTAGGAGTTCTTTTGATCTCTGTGGTTTTGGCTTTGACCATTGTCATAACTTGTAAGAAGTTCTTCCTTCAAGGTGTGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCAGCTACGCGGCAGGGTTCTCCTCTGAGCTTGTGACAAATGCAAGGTATATTTCTGAAATTGCAGAGTTAAGCAGAGAGGACCTCCCCACATGTAGGTCTTATTCTTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGATAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAGAGGAAAACTGCAGAGTGGGATACAGATTGTAATAAGGTCCCTGCCTGTGTCAAAAAAGTATTCAGTTAGAAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTCCGTCACCCTCATTTGGTATCCCTTCTTGGTCACTGCATTGATGGTGTTGTAGGAGAGAATAATGAGACAAATGTCTTTCTAATTTATGAATATGTGCCAAATGGGACTTTTCAAACGTATCTCTCTGGACATAGTTCTGGCAAGGTTTTCAACTGGTCTGAGCGATTATCAGTACTAATCAACATTGCTAAGGCTGTCCACTTCCTACACACTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGAGTGACAATATCTTGCTGAGTGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAAGCTGATGCATGTGGGGTAAAAGGAGAAAGTCCTAATTCGTGGCAAATGAAAATGTTAGAGGATGATGTGTATAGCTTTGGATTCATACTACTGGAGGCACTGGTTGGACCTTCAGTATCAGCTGAAAGAGTAACAGCTGTGTCGAATGTAATGGCAACTTTCAATAGTCAGGATGGGTGGAAAGGGATTGTGGACCCAGTTGTGCAAGCTACTTGCTCAAAAGAATCTCTTTTTGTTGTGATTTCCATAACAAATAAATGCATATCTCCTGAGTCATGGAACCGACCATCCATTGAGGATGTTCTTTGGAACCTTCAGTATGCTTCTCAAATTCAGGCAACAGATGATGGATGA 2379 0.4128 MHLLQAGFPLGCLHEQAAPCSLMQCPKKSRTFLMGFHDFVLLFCSFWCVFFVSSCSAQMQSSQTQVLLQLKKHLEYPRQLEIWRDRWTDLCSVSSSGQVNVTCKDNFVTELSILGDKPTEGRDFDGFAIPNQTLSDSFSMDSFVATVARLTSLRVLSLVSLGMWGPLPDRIHRLYALEHLDLSFNYLYGSIPPKICTMVNLQTLGLGDNFFNGTIPNVFNSSSNLSVLSLRNNMLKGPFPPSILSVTSLKDIDMSSNQISGMLQDFSALSSLEQLDLGENKLESFLPAMPKGLISLFLGRNSFSGEIPKRYGQLNRLQKLDVSFNALTGTAPAELFSLPNISYLNLASNMLNGPLQSHLKCSSQLTFVDISYNRLVGDLPSSLSTRSDNRVVKSDGNCLSGGVQHQHSVSYCTEAHVKKKSYRVGIFVGVIVGVLLISVVLALTIVITCKKFFLQGVSEQHLLHKTVQDSSYAAGFSSELVTNARYISEIAELSREDLPTCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLQSGIQIVIRSLPVSKKYSVRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGENNETNVFLIYEYVPNGTFQTYLSGHSSGKVFNWSERLSVLINIAKAVHFLHTGMIPGFFKNRLKSDNILLSENWMAKLSDYGLSIISEEADACGVKGESPNSWQMKMLEDDVYSFGFILLEALVGPSVSAERVTAVSNVMATFNSQDGWKGIVDPVVQATCSKESLFVVISITNKCISPESWNRPSIEDVLWNLQYASQIQATDDG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8808g00004 792 SMART LRR_typ_2 269 292 IPR003591 -
Vium8808g00004 792 SMART LRR_typ_2 246 268 IPR003591 -
Vium8808g00004 792 SMART LRR_typ_2 314 338 IPR003591 -
Vium8808g00004 792 SMART LRR_typ_2 174 198 IPR003591 -
Vium8808g00004 792 Gene3D Ribonuclease Inhibitor 60 292 IPR032675 -
Vium8808g00004 792 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 599 792 - -
Vium8808g00004 792 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 293 417 - -
Vium8808g00004 792 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 45 403 - -
Vium8808g00004 792 Gene3D Transferase(Phosphotransferase) domain 1 599 791 - -
Vium8808g00004 792 Gene3D Ribonuclease Inhibitor 293 426 IPR032675 -
Vium8808g00004 792 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 60 291 - -
Vium8808g00004 792 Gene3D Phosphorylase Kinase; domain 1 478 598 - -
Vium8808g00004 792 Pfam Leucine rich repeat 316 375 IPR001611 GO:0005515
Vium8808g00004 792 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Vium8808g00004 792 SUPERFAMILY L domain-like 147 404 - -
Vium8808g00004 792 SUPERFAMILY Protein kinase-like (PK-like) 499 781 IPR011009 -
Vium8808g00004 792 ProSiteProfiles Protein kinase domain profile. 516 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8808g00004 792 Pfam Protein tyrosine and serine/threonine kinase 522 777 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8808g00004 Vium-Chr8808 71971 76965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8808g00004 41 728 Miscellaneous Gene Families AT5G14210 49.571 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium8808g00004 PK_Tyr_Ser-Thr 5.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8808g00004 - - gmx:100802978 1271.91