Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8808g00003 ATGGCCACCCAAAACCAAACACACTCTCTTCCAAACACCACTATCGACCAAAACACCGGTTTCTGTTCTTCTTCTAAAATCTTCCACAGCCTCCGTCCAAACGTCCCCCTCCCTCCGCTGTCTCAGCCGCTCTCCCTCACCGATTACGCCCTCTCCCTTCTCCCCACCGCCGCCACCGCCACTGAAAACTCCGCCCTAATCGATGCCGCCACCGGCCGTCAGCTCTCCTACTCCCTCTTCCTCTGCCAAGTAAAATCCCTCGCCTCCTCCATCCAATCTCTCACCCCTCTCTCCAAAGGCCACGTGGCACTAATCCTCATTCCAACCTCCCTGCACGTCCCCGTACTCTACTTCTCTCTCCTCTCGCTAGGCGTCACAGTCGCACCTGCCAACCCGCTCAGTACCGCTTCCGAGTTGACTCACCTCGTCCGACTCACAAAACCCGCCATCGCCTTCGCCACCTCCGCCGTCGCCTCAAACATCCCCGCCCTCAAATTCGGCACTGTTCTCACCGACTCCCCGCTCTTCCTCTCCATGCTCGACGCCAACGTAGACTCACACTCACGCGCTCCCGGAGTCGAAGTGAGTCAGTCCGGCTCCGCCGCAATTCTCTTCTCATCGGGCACCACCGGGCGCGTGAAGGGCGTGTTTCTCACCCACCGGAACTTCATCGCACTCATATCCGGGTACTATCACCTGAGGAACAACCAGCTAGCAGCCGGCGAAGCGGAGACGCATCCCGTGTCACTGATCACGCTGCCGCTGTTCCACGTGTTCGGGTTCTTCATGCTGGTCAGATCCATCGCTTTGGGGGAGACGCTCGTTCTGATGCAGAGATTCGATTTCGAAGGGATGCTCAAAACCGTGGAGAGGTATAAAATCTCAATGATGCCGGTGTCGCCGCCGCTCGTGGTGGCCCTCGCCAAGTCGGAGCTCGTGAACAAGTACGACCTCAGCTCGCTCCGGATGCTAGGTTGCGGCGGCGCTCCACTCGGCGAGCAGGTCGCCAGTGACTTCAAAGCCAAATTCCCCAACGTGGAAATTTCCCAGGGCTATGGTCTGACCGAAAGTGGAGGAGGAGCAGCCAGATCATTTGGACCTGAGGAGATGAAGCGCCATGGCTCTGTGGGTCGACTATCAGAAAACATGGAGGCCAAGATAGTGGACCCTGAAACTGGAGAGGCATTGCCTCCTTGCCAAAAAGGGGAACTGTGGATTCGAGGTCCAACTATCATGAAAGGTTATGTAGGAGATGAGAAGGCGACAGCTGAAACATTGGATTCAGAGGGATGGCTGAAGACGGGCGATCTTTGTTATTTTGACTCTGATGGTTTCCTCTACATTGTAGATAGGCTGAAGGAATTGATCAAATACAAAGCTTATCAGGTCCCCCCCGCTGAATTGGAACATATACTTCACACAAATCCTGAAATTGCTGATGCTGCAGTAGTTCCGTACCCTGATGAAGAAGCAGGACAGATTCCTATGGCCTTTGTAGTAAGAAAACCTGGAAGCAACATCTCTGCAAATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCTCCGTACAAGAAGATACGGCGTGTTTCTTTTGTCAATTCTATCCCAAAATCTCCGGCTGGCAAAATTTTGAGAAGAGAATTAGTTGATTATGCTCTATCCAGTGGTTCATCCAAATTGTGA 1683 0.5377 MATQNQTHSLPNTTIDQNTGFCSSSKIFHSLRPNVPLPPLSQPLSLTDYALSLLPTAATATENSALIDAATGRQLSYSLFLCQVKSLASSIQSLTPLSKGHVALILIPTSLHVPVLYFSLLSLGVTVAPANPLSTASELTHLVRLTKPAIAFATSAVASNIPALKFGTVLTDSPLFLSMLDANVDSHSRAPGVEVSQSGSAAILFSSGTTGRVKGVFLTHRNFIALISGYYHLRNNQLAAGEAETHPVSLITLPLFHVFGFFMLVRSIALGETLVLMQRFDFEGMLKTVERYKISMMPVSPPLVVALAKSELVNKYDLSSLRMLGCGGAPLGEQVASDFKAKFPNVEISQGYGLTESGGGAARSFGPEEMKRHGSVGRLSENMEAKIVDPETGEALPPCQKGELWIRGPTIMKGYVGDEKATAETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEEAGQIPMAFVVRKPGSNISANQVMEFVAKQVSPYKKIRRVSFVNSIPKSPAGKILRRELVDYALSSGSSKL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8808g00003 560 Gene3D - 454 554 IPR045851 -
Vium8808g00003 560 FunFam 4-coumarate--CoA ligase 2 454 555 - -
Vium8808g00003 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 550 - -
Vium8808g00003 560 Gene3D - 27 453 IPR042099 -
Vium8808g00003 560 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
Vium8808g00003 560 Pfam AMP-binding enzyme 58 458 IPR000873 -
Vium8808g00003 560 SUPERFAMILY Acetyl-CoA synthetase-like 56 553 - -
Vium8808g00003 560 Pfam AMP-binding enzyme C-terminal domain 467 542 IPR025110 -
Vium8808g00003 560 CDD 4CL 38 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8808g00003 Vium-Chr8808 26806 30122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8808g00003 15 560 Monolignol Biosynthesis Gene Families AT5G63380 61.221 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8808g00003 K01904 - gmx:100777435 895.575