Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8808g00002 TCTTGCCTGTGTAGCACGTTTCATTTACGGTGTGATGGTCATGGTGACGGTGCAGGTTATGTAGGAGATGAGAAGGCGACAGCTGAAACATTGGATTCAGAGGGATGGCTGAAGACGGGCGATCTTTGTTATTTTGACTCTGATGGTTTCCTCTACATTGTAGATAGGCTGAAGGAATTGATCAAATACAAAGCTTATCAGGTCCCCCCCGCTGAATTGGAACATATACTTCACACAAATCCTGAAATTGCTGATGCTGCAGTAGTTCCGTACCCTGATGAAGAAGCAGGACAGATTCCTATGGCCTTTGTAGTAAGAAAACCTGGAAGCAACATCTCTGCAAATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCTCCGTACAAGAAGATACGGCGTGTTTCTTTTGTCAATTCTATCCCAAAATCTCCGGCTGGCAAAATTTTGAGAAGAGAATTAGTTGATTATGCTCTATCCAGTGGTTCATCCAAATTGTGA 498 0.4357 SCLCSTFHLRCDGHGDGAGYVGDEKATAETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEEAGQIPMAFVVRKPGSNISANQVMEFVAKQVSPYKKIRRVSFVNSIPKSPAGKILRRELVDYALSSGSSKL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8808g00002 165 Pfam AMP-binding enzyme 17 63 IPR000873 -
Vium8808g00002 165 Pfam AMP-binding enzyme C-terminal domain 72 147 IPR025110 -
Vium8808g00002 165 SUPERFAMILY Acetyl-CoA synthetase-like 11 158 - -
Vium8808g00002 165 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 155 - -
Vium8808g00002 165 FunFam 4-coumarate--CoA ligase 2 59 160 - -
Vium8808g00002 165 Gene3D - 59 159 IPR045851 -
Vium8808g00002 165 Gene3D - 8 58 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8808g00002 Vium-Chr8808 24439 25771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8808g00002 19 165 Monolignol Biosynthesis Gene Families AT5G63380 74.830 4.80e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8808g00002 K01904 - gmx:100777435 289.271