Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8807g00003 ATGGCAAAGTCCAGCACACTGTCTCTCCATGGCTATGGTATATTGATCACACTAATGCTATTCCATAAGCTCATTCCTATCAAAGGTAGCAGCTATCATGACGACTGCGGGGAATTGTCTTGTGGGCCAAATCAACCACCTATTAGATTTCCCTTCCAACTTGTCAAGGGGATACATGAATGTGCTCATCGTGGCTATTGTCTGTATTGTACTCAAGAAAACAACACCATGCTTTTCCTCCCTACCATAAAACTCCAGGTCGAATACATAGACTACCAAACGTTGCAAATTTACTTGAAGGATCCGAACAATTTCCTTCCAAAAACTCTTCTAAATCATTACAATCCTTTTAATGATTATTACTTTACCGTATCAAGCAGCTTGAGCTTCTTTGACTGTTCTTCAGTTGGGTATAGACAACTCAGAAATTCATATGGATCGTACCAAGATATGATCTCCTGTCCGATTTACGTCACTGATTCTCAGGCAAGTGTCTTGGAATGGGACCTGACATTCTGTTCAAAGATGTTTGACGTCACTGCACCTGTTTCGGCATTCGACATGCTGCAGAATAAGTTAACATTGACATGGTCCAAACCAGCTTGTACTGCGTGCGAAGCGCAAGGCAAAAGATGTAAATGGAAGAACAACAGCACCGAAGTTATCGAATGTTTTGATTGCTATAACCAAAGGGGCCTCCAGAAAAGAATCACGGATTTTAGATCTTTTATTGTTTCTACTACAGTAATCAAGTCTCCTACAGTTATCGTAGGTTCAGTTCTTTTGGGCCTGCTGGTCATTGTGGCTTTTAAGAGTTTCCTTTATTTTAGAAAGAAGGAAGAAGACCAAGCAAGAGTGGACAAGTTCTTAGAGGATTACAGAGCAGAAAAGCCTACAAGGTTTACGTACGCAGATGTCAAGAGAATCACCGGTGGTTTTAAAGAAAAACTAGGGGAAGGAGCTCACGGAGCTGTTTTCAGAGGAAAACTTTCGAATGAGATTCTCGTGGCTGTGAAGATCATCAATAATTGTGATGGAGATGGGAATGAGTTCATCAATGAAGTTGGAATTATGGGAAAAATCCACCACATCAACGTGATTCGTTTGTTAGGCTTTTGCGCCGAAGGAATCCATCGTGCTCTTGTCTACAATTTGTTTCCAAAGGGTTCGCTACAAAGCTTCATATTTCCACCCGATGACAAGGACCATTTCCTTGGCTGGGAGAAGATGCAACACATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTCCATCAAGGTTGTAATAATCCCATTGTTCACTTTGACATAAATCCTTGCAATGTGTTGCTTGATGACAACTTCACTCCAAAGATTTCTGATTTTGGATTAGCCAAATTGTGTTCCAAGAATCCAAGTTTGGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCGGAAGTTTTCTCCAGGAACTTCGGAAATGTGTCTTACAAGTCAGATATTTACAGTTATGGAATGTTGTTGCTGGAAATGGTTGGAGGAAGGAAGAATGTAGACATGTCATCCCCGCAAAATATCCATATTCTATATCCAGATTGGATCCATAATCTGGTTGATGGAGACATACATATCCAAGTTGAGGATGAAGACCATGTTAAAATTGCGAAGAAGTTGGCTATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACCGCCCATCCATGAAATCTGTTATACAAATGCTAGAAACTAAAGAGGTAGACCAGTTAACTGTGCCTCCTAATCCATTTCACTCAACCACTTCAGCTACTGCCAGTCTCAATTCAACAAGAAGACCTTTGGAGTTGGAAGCAATTCAAGAGTAA 1860 0.4118 MAKSSTLSLHGYGILITLMLFHKLIPIKGSSYHDDCGELSCGPNQPPIRFPFQLVKGIHECAHRGYCLYCTQENNTMLFLPTIKLQVEYIDYQTLQIYLKDPNNFLPKTLLNHYNPFNDYYFTVSSSLSFFDCSSVGYRQLRNSYGSYQDMISCPIYVTDSQASVLEWDLTFCSKMFDVTAPVSAFDMLQNKLTLTWSKPACTACEAQGKRCKWKNNSTEVIECFDCYNQRGLQKRITDFRSFIVSTTVIKSPTVIVGSVLLGLLVIVAFKSFLYFRKKEEDQARVDKFLEDYRAEKPTRFTYADVKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKIINNCDGDGNEFINEVGIMGKIHHINVIRLLGFCAEGIHRALVYNLFPKGSLQSFIFPPDDKDHFLGWEKMQHIALGIAKGIEYLHQGCNNPIVHFDINPCNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPQNIHILYPDWIHNLVDGDIHIQVEDEDHVKIAKKLAIVGLWCIQWQPVNRPSMKSVIQMLETKEVDQLTVPPNPFHSTTSATASLNSTRRPLELEAIQE 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8807g00003 619 FunFam serine/threonine-protein kinase PBS1-like 278 385 - -
Vium8807g00003 619 Gene3D Phosphorylase Kinase; domain 1 284 385 - -
Vium8807g00003 619 PANTHER RUST RESISTANCE KINASE LR10-RELATED 283 599 IPR045874 GO:0004672
Vium8807g00003 619 Gene3D Transferase(Phosphotransferase) domain 1 386 590 - -
Vium8807g00003 619 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Vium8807g00003 619 FunFam PR5-like receptor kinase 386 591 - -
Vium8807g00003 619 Pfam Protein kinase domain 314 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8807g00003 619 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Vium8807g00003 619 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Vium8807g00003 619 ProSiteProfiles Protein kinase domain profile. 311 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8807g00003 Vium-Chr8807 48892 50906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8807g00003 12 608 Receptor kinase-like Gene Family AT1G66910 32.308 4.13e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium8807g00003 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8807g00003 - - gmx:102662104 847.81