Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8807g00002 ATGGCTTCCTCAAGCGGAACATGTTCGGGTTCATCCTCTCTGCTTCAGAACTCGGGTTCTGAGGAGGACTTGCAAGCGGTAATGGATCAGAGAAAGAGGAAGAGAATGAAATCGAATCGCGAATCTGCACGGCGATCTCGCATGAGGAAGCAGAAGCACTTGGACGATCTGGTTACCCAAGTGGCTCAGCTGAGAAAGGAGAATCAGCAGATACTCACCACCGTCAACATCACCACGCAGCAGTTCTTGAGCGTTGAGGCTGAGAACTCGGTGCTCCGGGCTCAGGTGGGTGAGCTGAGCCATCGGTTAGAGTCTCTGAACGAGATCATCGAACTCTGGTTGTGTGTGAGAAGGAGAGGGGAAGATGAAGTGGGAATCATAATGAGTTTTCCCACTGTGCCCTTTCCCTAA 411 0.5158 MASSSGTCSGSSSLLQNSGSEEDLQAVMDQRKRKRMKSNRESARRSRMRKQKHLDDLVTQVAQLRKENQQILTTVNITTQQFLSVEAENSVLRAQVGELSHRLESLNEIIELWLCVRRRGEDEVGIIMSFPTVPFP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8807g00002 136 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Vium8807g00002 136 MobiDBLite consensus disorder prediction 1 53 - -
Vium8807g00002 136 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Vium8807g00002 136 FunFam BZIP transcription factor 29 81 - -
Vium8807g00002 136 Coils Coil 47 74 - -
Vium8807g00002 136 Pfam bZIP transcription factor 31 75 IPR004827 GO:0003700|GO:0006355
Vium8807g00002 136 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 92 IPR004827 GO:0003700|GO:0006355
Vium8807g00002 136 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Vium8807g00002 136 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 113 - -
Vium8807g00002 136 Gene3D - 29 87 - -
Vium8807g00002 136 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Vium8807g00002 136 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8807g00002 Vium-Chr8807 47963 48378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8807g00002 25 113 bZIP Transcription Factor Family AT4G34590 69.663 2.78e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium8807g00002 bZIP_1 4.2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8807g00002 K25786 - gmx:100101862 183.726