Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8796g00001 ATGACTTCTCCTTTCATCCAGAACCAAGACTGGGACATGTCGCAGGAGCCCTCAGAAATTTTGTTCAATTCATTGCCAAGAAATGCTGTTCTTGATCCTATTCACGATTCACTTTCCTTCGATATGGTTGATTTCTCCACTGCACCACCACAAGTAAATCACAACCAGTTGATGCTCAAGACAGAAGAAGAACTGAAGAAGAAGGAGAGGTCGTACAAAGGTGTGAGGAAGAGACCATGGGGAAAATATGCAGCAGAGATAAGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAAGCTGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGAGGCCACAATGCTGTGCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTTTGCAAGAGATCCAATACACCTGCTTCTCTGGTTCTTCTCCTGCTCTTGCACTCAAGGAGAGGCACTGCATCCTAAGAAAAGTGTCATCTCAAGCTAAAAAGTGTAAAGGGAAACACCCATCAGAGGATCCAACACCATCTTTGCTCGTGTTAGAGGATCTGGGAGTTGAATATTTAGAGCATCTTTTAAGCATATCAGATCAAAGTGAAAGCCCTAGCTTCTTCGACTAA 639 0.4382 MTSPFIQNQDWDMSQEPSEILFNSLPRNAVLDPIHDSLSFDMVDFSTAPPQVNHNQLMLKTEEELKKKERSYKGVRKRPWGKYAAEIRDTTRNGTRVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFSGSSPALALKERHCILRKVSSQAKKCKGKHPSEDPTPSLLVLEDLGVEYLEHLLSISDQSESPSFFD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8796g00001 212 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Vium8796g00001 212 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Vium8796g00001 212 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Vium8796g00001 212 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vium8796g00001 212 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Vium8796g00001 212 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Vium8796g00001 212 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Vium8796g00001 212 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Vium8796g00001 212 FunFam Ethylene-responsive transcription factor 2 70 131 - -
Vium8796g00001 212 PANTHER DNA-BINDING DOMAIN 60 202 IPR044808 GO:0003700|GO:0009873
Vium8796g00001 212 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8796g00001 Vium-Chr8796 23784 25114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8796g00001 66 205 AP2-EREBP Transcription Factor Family AT3G23240 57.857 5.41e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium8796g00001 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8796g00001 K14516 - gmx:100812017 324.324