Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00048 ATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAGTTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTGCCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATATTGGATCTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCCAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGGAGATCTTCCTCGAGTGGTATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAACTGACAGCTACAATTATTCGGATGGATCATTACATCTTCCTACCGTGGAAAATAAAAATCATGAAGGCGATAAGGGCAGTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCCTTGACTGGTAACGTCACCGACTCAAATATGAGAGAGAGTTCAAGGGTTGGCCTCAATCAACCTTTTGCCCAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCTTGCCAACACAGTACTCATGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTAGAAGATAGCTTCAATCAGATGCCATTACACGGTAAGCAGCATCACATCCAAGTTGATCAATCACAGTCAGTTGCTTCAATTAGTTCAGCTCCCTCTATAACGGAGGAAGAGGTTCCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCAATCCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAATAACCTCAGTTGCATTTCTGATGTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGATTTGCATTTCCAGTGGCTGCAGGGTGAATGTTATAACATGAACTTCGGTCTGCAGAATATAGGAATGTCAGAATATTATGATCCAGGGCTTATTGCAGAAGCTCCAAGTCACTTATATGATTCAGCCGATTACTCAGTTATGGATCAAGGTCTATTCATAGCATGA 1524 0.4022 MPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMRNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSAKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSTDSYNYSDGSLHLPTVENKNHEGDKGSVSQFTIAKKGRPLTGNVTDSNMRESSRVGLNQPFAQSEGNHAVFDCSLPTQYSWTEVPHMQLKEEHKSLVHLEDSFNQMPLHGKQHHIQVDQSQSVASISSAPSITEEEVPACIEAKPLFSDFKNDQSSSVNSIGNAVDTFPIQPGSLVMNAQSLEPISTTNSGLKAHGYNNLSCISDVEIYQRNLLLGGEAASAPLDEDLHFQWLQGECYNMNFGLQNIGMSEYYDPGLIAEAPSHLYDSADYSVMDQGLFIA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00048 507 CDD REC_typeB_ARR-like 1 62 - -
Vium8795g00048 507 FunFam Two-component response regulator 124 187 - -
Vium8795g00048 507 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Vium8795g00048 507 MobiDBLite consensus disorder prediction 190 253 - -
Vium8795g00048 507 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 243 IPR045279 GO:0009736
Vium8795g00048 507 Pfam Response regulator receiver domain 1 57 IPR001789 GO:0000160
Vium8795g00048 507 Pfam Myb-like DNA-binding domain 130 180 IPR001005 -
Vium8795g00048 507 Gene3D - 124 187 - -
Vium8795g00048 507 MobiDBLite consensus disorder prediction 212 240 - -
Vium8795g00048 507 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 181 IPR006447 GO:0003677
Vium8795g00048 507 Gene3D - 1 122 - -
Vium8795g00048 507 SUPERFAMILY CheY-like 1 76 IPR011006 -
Vium8795g00048 507 SUPERFAMILY Homeodomain-like 126 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00048 Vium-Chr8795 236884 239566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00048 21 507 Response Regulator Gene Family AT1G67710 38.189 6.20e-76 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium8795g00048 Response_reg 7.8e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00048 K14491 - gmx:100797421 865.529