Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00046 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGTCTGCGAGTTCTCGTTGTTGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATTAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAGTTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTGCCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATATTGGATCTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCCAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGGAGATCTTCCTCGAGTGGTATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAACTGACAGCTACAATTATTCGGATGGATCATTACATCTTCCTACCGTGGAAAATAAAAATCATGAAGGCGATAAGGGCAGTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCCTTGACTGGTAACGTCACCGACTCAAATATGAGAGAGAGTTCAAGGGTTGGCCTCAATCAACCTTTTGCCCAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCTTGCCAACACAGTACTCATGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTAGAAGATAGCTTCAATCAGATGCCATTACACGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAATAACCTCAGTTGCATTTCTGATGTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGATTTGCATTTCCAGTGGCTGCAGGGTGAATGTTATAACATGAACTTCGGTCTGCAGAATATAGGAATGTCAGAATATTATGATCCAGGGCTTATTGCAGAAGCTCCAAGTCACTTATATGATTCAGCCGATTACTCAGTTATGGATCAAGGTCTATTCATAGCATGA 1581 0.4073 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMRNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSAKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSTDSYNYSDGSLHLPTVENKNHEGDKGSVSQFTIAKKGRPLTGNVTDSNMRESSRVGLNQPFAQSEGNHAVFDCSLPTQYSWTEVPHMQLKEEHKSLVHLEDSFNQMPLHGNAVDTFPIQPGSLVMNAQSLEPISTTNSGLKAHGYNNLSCISDVEIYQRNLLLGGEAASAPLDEDLHFQWLQGECYNMNFGLQNIGMSEYYDPGLIAEAPSHLYDSADYSVMDQGLFIA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00046 526 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vium8795g00046 526 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Vium8795g00046 526 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vium8795g00046 526 SUPERFAMILY CheY-like 16 147 IPR011006 -
Vium8795g00046 526 Gene3D - 17 193 - -
Vium8795g00046 526 MobiDBLite consensus disorder prediction 261 324 - -
Vium8795g00046 526 CDD REC_typeB_ARR-like 19 133 - -
Vium8795g00046 526 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 306 IPR045279 GO:0009736
Vium8795g00046 526 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vium8795g00046 526 SMART REC_2 17 129 IPR001789 GO:0000160
Vium8795g00046 526 MobiDBLite consensus disorder prediction 283 311 - -
Vium8795g00046 526 Gene3D - 195 258 - -
Vium8795g00046 526 FunFam Two-component response regulator 195 258 - -
Vium8795g00046 526 FunFam Two-component response regulator 17 186 - -
Vium8795g00046 526 SUPERFAMILY Homeodomain-like 197 254 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00046 Vium-Chr8795 234829 239566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00046 13 257 Response Regulator Gene Family AT2G25180 58.065 4.04e-82 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium8795g00046 Response_reg 1.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00046 K14491 - gmx:100797421 914.45