Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00045 ATGTGGCAAAATCAGGCCAATCATTCTTCTTACAGTGATTCTGTCAAGGCTCTTGAAGATGATATACAACATGCTAATTCCTTGGCATTGTCACTTCCTGGAGATTGTGATGGGAACTTTTTTCAGATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGCACTTGATTCAATGGTTGGATCTTAGTTGCACAGATACTTTACCTGTGTATTTGGGATTACTCCATATACTAATTTTCAATGTATACGCTGATGGAATACCATCTATTTCCTCAAGTGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTGCTTCAAGGCGAGTTTAACAATGATCCAAGACACAGTTATGCAGAAGTGAAGAGAAAGAGGCTTGAAAAGGTTCTCAGTAAAGATTTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAACAACATGAAGATGGTTCTGCCTAATTGTGGACATTCCTTCTGCATAAGTTGCTTCCATGATTGGTACATGAGATCAGAGTCATGTCCCTTTTGCCGTGGAAGCATGAGAAGGATCAGTCCTGCAGATTTATGGATGGTCATTGGCAACAGTGATGTGGTTGACAGCTTCACCATTGCAAAAGACAATTTGAGACGTTTGTACCTTTTCATTAAAACTCTGCCTCCAATCTTAGCAGAACCACATCTACTATACACATTCAATTACATGCTATGA 735 0.3878 MWQNQANHSSYSDSVKALEDDIQHANSLALSLPGDCDGNFFQMKLSYSPFAPLFLHLIQWLDLSCTDTLPVYLGLLHILIFNVYADGIPSISSSERKATIKEFYAVIYPSLRLLQGEFNNDPRHSYAEVKRKRLEKVLSKDLEGDEECGICMENNMKMVLPNCGHSFCISCFHDWYMRSESCPFCRGSMRRISPADLWMVIGNSDVVDSFTIAKDNLRRLYLFIKTLPPILAEPHLLYTFNYML 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00045 244 PANTHER RING FINGER PROTEIN 41, 151 9 228 - -
Vium8795g00045 244 SMART ring_2 148 185 IPR001841 -
Vium8795g00045 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 195 IPR013083 -
Vium8795g00045 244 SUPERFAMILY RING/U-box 134 190 - -
Vium8795g00045 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Vium8795g00045 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00045 Vium-Chr8795 227254 229626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00045 112 204 C3H Transcription Factor Family AT2G20030 31.068 1.07e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00045 - - gmx:100805014 419.083