Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00044 ATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGCACTTGATTCAATGGTTGGATCTTAGTTGCACAGATACTTTACCTGTGTATTTGGGATTACTCCATATACTAATTTTCAATGTATACGCTGATGGAATACCATCTATTTCCTCAAGTGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTGCTTCAAGGCGAGTTTAACAATGATCCAAGACACAGTTATGCAGAAGTGAAGAGAAAGAGGCTTGAAAAGGTTCTCAGTAAAGATTTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAACAACATGAAGATGGTTCTGCCTAATTGTGGACATTCCTTCTGCATAAGTTGCTTCCATGATTGGTACATGAGATCAGAGTCATGTCCCTTTTGCCGTGGAAGCATGAGAAGGATCAGTCCTGCAGATTTATGGATGGTCATTGGCAACAGTGATGTGGTTGACAGCTTCACCATTGCAAAAGACAATTTGAGACGTTTGTACCTTTTCATTAAAACTCTGCCTCCAATCTTAGCAGAACCACATCTACTATACACATTCAATTACATGCTATGA 609 0.3859 MKLSYSPFAPLFLHLIQWLDLSCTDTLPVYLGLLHILIFNVYADGIPSISSSERKATIKEFYAVIYPSLRLLQGEFNNDPRHSYAEVKRKRLEKVLSKDLEGDEECGICMENNMKMVLPNCGHSFCISCFHDWYMRSESCPFCRGSMRRISPADLWMVIGNSDVVDSFTIAKDNLRRLYLFIKTLPPILAEPHLLYTFNYML 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00044 202 PANTHER RING FINGER PROTEIN 41, 151 1 186 - -
Vium8795g00044 202 SUPERFAMILY RING/U-box 92 148 - -
Vium8795g00044 202 Pfam Zinc finger, C3HC4 type (RING finger) 103 149 - -
Vium8795g00044 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 153 IPR013083 -
Vium8795g00044 202 SMART ring_2 106 143 IPR001841 -
Vium8795g00044 202 ProSiteProfiles Zinc finger RING-type profile. 106 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00044 Vium-Chr8795 227254 229626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00044 70 162 C3H Transcription Factor Family AT2G20030 31.068 9.41e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00044 - - gmx:100805014 353.984