Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00042 ATGTGTTTATGGTCTCTTTTTGTGATTACTCTTCTTCTTGTGCTGAGATCACATGTGCTTTGCCAACTTCAAGAGTTTATAAGTATTGACTGTGGAGGGACGAGTAACTACACTGATAAAGGAACGGGGCTTTCATGGATATCAGATTCTGGAATGATGAAACATGGGAAATCAGCGTTGGTACAAAATCCTAGAGAAAACAAGGTTCAGTATCAGAGACGCAGAGAGTTTCCAATTGACAGCAGAAAATACTGTTATACACTTGGTTCTGAGCAGAGAAGAAGGTATCTAGTGCGAGCAACGTTTCAGTATGGTATCTTGGATGATGGTGACACATACCCTCAGTTTCAGCTCTATTTGGATGCAACAAAATGGGCTACTGTGTCAATATATGATGCCACAAGAACTTATGTTAAGGAAATGATCTTCAGGGCACCCTCAAACTCCATTGATGTTTGCGTGTGCTGTGCTACCACCGGCTCTCCCTTCATATCTACCCTTGAACTAAGGCCCTTGAATCTTTCTATGTATGCCACAGATTTTGAGAGCAATTTCTTCTTGAAAGTGGCTGCAAGAATTAACTTTGGTGCTCCAAGTGAGGATGTAGTCAGGTATCCAGATGACCCATATGATAGAATTTGGGAGTCTGATCTTATTAAAAGACAAAACTATCTGGTTGGGGTGGCCCCGGGCACTGAAAGAATTAATACAACAAAGAAAATAGAAATAGAGACAAGAGAATACCCACCTGTTAAAGTGATGCAGACTGCAGTTGTTGGCACAAAAGGAGTCCTTAGCTATAGACTAAACCTGGAAGAATTCCCTGGAAATGCTAGAGCTTATGCATATTTTGCAGAGATTGAAGATCTGGCTAAGAATGAGACTAGAAAATTCAAATTGGAGCAACCTTACATAGCTGACTACAGTAATGCAGTGGTGAACATAGCTGAGAATGCCAATGGGACCTACACTCTTTATGAACCAAGTTATATGAACGTGAGTCTTGAGTTTGTGCTTTCGTTCTCCTTTGTTAAGACCAGGGATTCTACTCAAGGACCTCTTCTAAATGCAATGGAAATAAGCAAATACGTGCAAATTGCTTCGAAAACTGACAGACAAGACTCAAATTTTGTTAATGCGTTTCGCTTCTTATCAGCTGGAAGTGCCCTGATGAATGAAGGTGATCCCTGTGTTCCAACTCCCTGGGACTGGATAAATTGTAGTACAACTACACCTCCAAGAATTACAAAGATAAATCTGTCACGAAGGAATCTGAAGGGTGAAATCCCGAGGGATCTCAACAACATGGAATCATTGACAGAACTGTGGTTAGACGGGAACTTGCTTACAGGACAACTTCCTGACATGAGCAATCTTGTCAATCTAAAGATTGTGCATCTGGAGAACAACAGATTGGCAGGTCCCTTACCATCTTACTTGGGTAGTTTACCAAGTTTACAAGCACTGTTCATACAGAATAACTCTTTTAGTGGGGTAATACCATCAGGTTTACTGTCAGGCAAAATCATTTTCAACTTTGATGATAATCCTGAACTGCATAAAGGGAACAAGAAGCATTTTCAGTTGATGCTAGGAATTTCTATTGGAGTACTAGGGATTCTATTAATATTATTCTTAGCAAGTTTGGTTCTATTGCTTAATCTGCGGAGAAAAACTTCTCGACAGAAACGAGATGAAAAGGGTATTTCTGGGCGCAGCAGTACTAAACCTTTAACTGGATACTCATTTGGTCGAGGTGGAAATTTAATGGATGAAGGTACTGCTTGCTATATTACACTCTCTGAGTTGAAAGAAGCTACTAATAATTTCTCAAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTCTACTATGGGAAAATGAGTGATGGAAAAGAGGTGGCAGTTAAGACTATGACCGATCCATCAAGCTATGGGAACCAGCAATTTGTAAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAATATCAGCATATGCTGGTTTACGAGTATATGCACAATGGCACTTTAAGGGAGTACATTCACGAATGTTCGAACCAGAAGCAATTGGATTGGTTAGCTCGCCTTCGAATTGCAGAAGATGCAGCTAGAGGTCTTGAATACTTACACACAGGATGCAATCCAAGTATCATTCACCGTGATGTGAAGACAAGCAATATTCTCCTAGACATCAATATGAGAGCAAAAGTGTCAGATTTTGGACTTTCAAGACTCGCTGAAGAAGATTTAACACACATATCAAGTGTTGCAAGGGGAACTGTAGGTTATCTGGATCCTGAGTACTACGCAAATCAGCAATTGACTGAAAAAAGTGACGTGTATAGTTTTGGAGTCGTTTTGTTGGAACTGATATCAGGAAAAAAACCTGTATCCTCAGAAGACTATGGTCCTGAAATGAACATCGTTCACTGGGTAAGATCCTTAATTCGTAAAGGAGATGTGATAAGCATTATGGACCCTTCCCTTGTGGGGAATGCCAAAACTGAATCAATTTGGAGGGTTGCTGAAATTGCTATGCAATGTGTAGAACAACACGGTGCCTACAGGCCAAAAATGCAAGAGGTCATTTTGGCCATACAAGATGCTTCTAGCATTGAAAAAGGCACAGAAAATCAACTCAAGCTATCATCTTCGAGCGGTTCAAAGCCACAGTCTTCTCGTAAGACTTTGCTTGCAAGTTTTCTAGAAATTGAGAGCCCTGATTCCTGCCTCCCCTCAGCCAGATAA 2784 0.4052 MCLWSLFVITLLLVLRSHVLCQLQEFISIDCGGTSNYTDKGTGLSWISDSGMMKHGKSALVQNPRENKVQYQRRREFPIDSRKYCYTLGSEQRRRYLVRATFQYGILDDGDTYPQFQLYLDATKWATVSIYDATRTYVKEMIFRAPSNSIDVCVCCATTGSPFISTLELRPLNLSMYATDFESNFFLKVAARINFGAPSEDVVRYPDDPYDRIWESDLIKRQNYLVGVAPGTERINTTKKIEIETREYPPVKVMQTAVVGTKGVLSYRLNLEEFPGNARAYAYFAEIEDLAKNETRKFKLEQPYIADYSNAVVNIAENANGTYTLYEPSYMNVSLEFVLSFSFVKTRDSTQGPLLNAMEISKYVQIASKTDRQDSNFVNAFRFLSAGSALMNEGDPCVPTPWDWINCSTTTPPRITKINLSRRNLKGEIPRDLNNMESLTELWLDGNLLTGQLPDMSNLVNLKIVHLENNRLAGPLPSYLGSLPSLQALFIQNNSFSGVIPSGLLSGKIIFNFDDNPELHKGNKKHFQLMLGISIGVLGILLILFLASLVLLLNLRRKTSRQKRDEKGISGRSSTKPLTGYSFGRGGNLMDEGTACYITLSELKEATNNFSKKIGKGSFGSVYYGKMSDGKEVAVKTMTDPSSYGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHMLVYEYMHNGTLREYIHECSNQKQLDWLARLRIAEDAARGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSSEDYGPEMNIVHWVRSLIRKGDVISIMDPSLVGNAKTESIWRVAEIAMQCVEQHGAYRPKMQEVILAIQDASSIEKGTENQLKLSSSSGSKPQSSRKTLLASFLEIESPDSCLPSAR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00042 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Vium8795g00042 927 SMART serkin_6 608 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8795g00042 927 ProSiteProfiles Protein kinase domain profile. 608 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8795g00042 927 Pfam Malectin-like domain 29 362 IPR024788 -
Vium8795g00042 927 Pfam Protein tyrosine and serine/threonine kinase 610 875 IPR001245 GO:0004672|GO:0006468
Vium8795g00042 927 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 506 - -
Vium8795g00042 927 PANTHER OS07G0107800 PROTEIN-RELATED 455 881 - -
Vium8795g00042 927 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Vium8795g00042 927 Gene3D Ribonuclease Inhibitor 373 522 IPR032675 -
Vium8795g00042 927 SUPERFAMILY L domain-like 399 516 - -
Vium8795g00042 927 SUPERFAMILY Protein kinase-like (PK-like) 594 875 IPR011009 -
Vium8795g00042 927 Gene3D Phosphorylase Kinase; domain 1 587 683 - -
Vium8795g00042 927 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 684 891 - -
Vium8795g00042 927 Gene3D Transferase(Phosphotransferase) domain 1 684 900 - -
Vium8795g00042 927 FunFam receptor-like serine/threonine-protein kinase NCRK 588 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00042 Vium-Chr8795 211704 217461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00042 1 927 Receptor kinase-like Gene Family AT1G67720 68.917 0.0 1290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium8795g00042 Malectin_like 3.6e-89 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00042 - - gmx:100807148 1670.6