Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00039 ATGGAATCATTGACAGAACTGTGGTTAGACGGGAACTTGCTTACAGGACAACTTCCTGACATGAGCAATCTTGTCAATCTAAAGATTGTGCATCTGGAGAACAACAGATTGACAGGTCCCTTACCATCTTACTTGGGTAGTTTACCAAGTTTACAAGCACTGTTCATACAGAATAACTCTTTTAGTGGGGTAATACCATCAGGTTTACTGTCAGGCAAAATCATTTTCAACTTTGATGATAATCCTGAACTGCATAAAGGGAACAAGAAGCATTTTCAGTTGATGCTAGGAATTTCTATTGGAGTACTAGGGATTCTATTAATATTATTCTTAGCAAGTTTGGTTCTATTGCTTAATCTGCGGAGAAAAACTTCTCGACAGAAACGAGATGAAAAGGGTATTTCTGGGCGCAGCAGTACTAAACCTTTAACTGGATACTCATTTGGTCGAGGTGGAAATTTAATGGATGAAGGTACTGCTTGCTATATTACACTCTCTGAGTTGAAAGAAGCTACTAATAATTTCTCAAAGAAAATTGGCAAAGGAAGCTTTGGATCTGTCTACTATGGGAAAATGAGTGATGGAAAAGAGGTGGCAGTTAAGACTATGACCGATCCATCAAGCTATGGGAACCAGCAATTTGTAAATGAGGTAGCCCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAATATCAGCATATGCTGGTTTACGAGTATATGCACAATGGCACTTTAAGGGAGTACATTCACGAATGTTCGAACCAGAAGCAATTGGATTGGTTAGCTCGCCTTCGAATTGCAGAAGATGCAGCTAGAGGTCTTGAATACTTACACACAGGATGCAATCCAAGTATCATTCACCGTGATGTGAAGACAAGCAATATTCTCCTAGACATCAATATGAGAGCAAAAGTGTCAGATTTTGGACTTTCAAGACTCGCTGAAGAAGATTTAACACACATATCAAGTGTTGCAAGGGGAACTGTAGGTTATCTGGATCCTGAGTACTACGCAAATCAGCAATTGACTGAAAAAAGTGACGTGTATAGTTTTGGAGTCGTTATGTTGGAACTGATATCAGGAAAAAAACCTGTATCCTCAGAAGACTATGGTCCTGAAATGAACATCGTTCACTGGGTAAGATCCTTAATTCGTAAANTAATGAACAATTTGTTTTTAGTAATAATTCATTTAAAAAATACCTAA 1233 0.3804 MESLTELWLDGNLLTGQLPDMSNLVNLKIVHLENNRLTGPLPSYLGSLPSLQALFIQNNSFSGVIPSGLLSGKIIFNFDDNPELHKGNKKHFQLMLGISIGVLGILLILFLASLVLLLNLRRKTSRQKRDEKGISGRSSTKPLTGYSFGRGGNLMDEGTACYITLSELKEATNNFSKKIGKGSFGSVYYGKMSDGKEVAVKTMTDPSSYGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHMLVYEYMHNGTLREYIHECSNQKQLDWLARLRIAEDAARGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVMLELISGKKPVSSEDYGPEMNIVHWVRSLIRKXMNNLFLVIIHLKNT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00039 410 PANTHER OS07G0107800 PROTEIN-RELATED 4 395 - -
Vium8795g00039 410 Pfam Protein tyrosine and serine/threonine kinase 175 375 IPR001245 GO:0004672|GO:0006468
Vium8795g00039 410 SUPERFAMILY Protein kinase-like (PK-like) 159 390 IPR011009 -
Vium8795g00039 410 ProSiteProfiles Protein kinase domain profile. 173 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8795g00039 410 SUPERFAMILY L domain-like 3 71 - -
Vium8795g00039 410 SMART serkin_6 173 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8795g00039 410 Gene3D Ribonuclease Inhibitor 1 105 IPR032675 -
Vium8795g00039 410 FunFam receptor-like serine/threonine-protein kinase NCRK 153 248 - -
Vium8795g00039 410 Gene3D Transferase(Phosphotransferase) domain 1 249 404 - -
Vium8795g00039 410 FunFam Os07g0541700 protein 249 339 - -
Vium8795g00039 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Vium8795g00039 410 ProSitePatterns Protein kinases ATP-binding region signature. 179 201 IPR017441 GO:0005524
Vium8795g00039 410 Gene3D Phosphorylase Kinase; domain 1 152 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00039 Vium-Chr8795 204175 207024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00039 1 395 Receptor kinase-like Gene Family AT1G67720 70.455 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium8795g00039 PK_Tyr_Ser-Thr 3.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00039 - - gmx:100807148 708.368