Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00026 ATGGCAGCTCTGTTACCTTGCGCGCCCAACATAGTCTCTGCTCCGTTCGGGAACCGGAGCACAAGCCGCCTTCCCAACCGTCCTCAATCCCACGCTTTCTCCGGTTCGACCAGGCACTTTCTTCGCGGCTCTCTATCCGTCGCCCGGTTCGGATTCAAACCCGAATTCTTGCCCGAGCCGGAGCACGCTGAAGGCGTGCTCAGAGAACTGTTTGGTCGAGCGGAGGGACTTCTTTACACGATTGCAGACGCCGCCGTATCTTCTTCTTCCGACACGGTTGCTGCTTCCGCCACCGCCAAACAGAGCAACGATTGGCTTTCCGGAATCACCAATTACATGGAGACGGTTCTTAAGGTACTCAAGGATGGGCTTTCTGCTTTGCATGTCCCATATGCTTATGGTTTTGCAATTATACTGCTCACAGTTCTTGTAAAAGCTGCTACTTTTCCCCTAACCAAAAAGCAGGTAGAATCCTCCTTAGCTATGCGAACTTTGCAACCTCAAATAAAGGCTATCCAGGAGCGGTATGCTGGTGATCAGGAGAGACTTCAACTTGAAACTGCTAGATTGTATAAACTAGCCAACATTAATCCTCTAGCAGGATGCCTGCCCACACTCGCAACCATACCAGTGTGGATTGGGCTATATCGAGCCCTTTCAAATGTGGCTGACGAGGGACTCCTTACTGAAGGCTTCTTTTGGATACCTTCTCTTGCTGGTCCAACTACAATCGCAGCTCGTCAAAATGGCAGTGGTATCTCTTGGCTTTTTCCTTTTGTGGATGGTGCCCCTCCCCTTGGATGGTCAGATACATTGGCTTATCTGGTCTTGCCGGTGTTGCTAATCGTCTCTCAGTACATATCTGTCCAAATAATGCAGTCATCACAGCCTAATGATCCCAACATGAAAAGTTCTCAAGTATTGACCAAGTTCCTTCCATTAATGATTGGTTACTTTGCTCTCTCAGTTCCTTCTGGTCTTAGCCTTTACTGGTTAACAAATAATATATTGAGCACTGGACAACAAGTATGGCTTCAAAAGTTAGGAGGTGCCAAAAATCCTGTGAGGCAAGTCCCAGATGATATCATCAAAAATGACGGAACCCGGGTTCAGAAGTCAATATCTAAGCTAAATTCCACAATAGTGGAAGAAGCCGGCCAAAGTGAGAAAACATCAGAGGGGCCACAACCTGGTGATAGATTTAAGCAATTAAAGGAGCAAGAGGCAAGGAGAAGACAACAAAGAGAAGAAGAAGAAAAAATGAAAGGCATGGAAACAGCAGCTAGAGAGACTGAAGTAGATGATAGTCACGTGACACTTGAGAAAACTGGAGACTTAGAGGGAAATCAGAATTTTACATCTACATCTGAGACAGAAAATAATGAAGGCTCTGCTCATTTCAACAATGATGAGATAAACGAGAAAAATTCAGACAAGGAACCAAGAGAAGTATTAACATCTACAACCACTGCAAACAGACAACCTCCTGCAGAAGATTCAGATCGCATGACAAAGGATTGA 1521 0.4589 MAALLPCAPNIVSAPFGNRSTSRLPNRPQSHAFSGSTRHFLRGSLSVARFGFKPEFLPEPEHAEGVLRELFGRAEGLLYTIADAAVSSSSDTVAASATAKQSNDWLSGITNYMETVLKVLKDGLSALHVPYAYGFAIILLTVLVKAATFPLTKKQVESSLAMRTLQPQIKAIQERYAGDQERLQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGAPPLGWSDTLAYLVLPVLLIVSQYISVQIMQSSQPNDPNMKSSQVLTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQKLGGAKNPVRQVPDDIIKNDGTRVQKSISKLNSTIVEEAGQSEKTSEGPQPGDRFKQLKEQEARRRQQREEEEKMKGMETAARETEVDDSHVTLEKTGDLEGNQNFTSTSETENNEGSAHFNNDEINEKNSDKEPREVLTSTTTANRQPPAEDSDRMTKD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00026 506 MobiDBLite consensus disorder prediction 395 442 - -
Vium8795g00026 506 Pfam 60Kd inner membrane protein 133 347 IPR028055 -
Vium8795g00026 506 PANTHER OXA1 82 412 IPR001708 GO:0016020|GO:0032977
Vium8795g00026 506 NCBIfam membrane protein insertase YidC 133 347 IPR028055 -
Vium8795g00026 506 MobiDBLite consensus disorder prediction 483 497 - -
Vium8795g00026 506 MobiDBLite consensus disorder prediction 443 467 - -
Vium8795g00026 506 CDD 5TM_YidC_Alb3 134 347 IPR047196 -
Vium8795g00026 506 MobiDBLite consensus disorder prediction 383 506 - -
Vium8795g00026 506 MobiDBLite consensus disorder prediction 468 482 - -
Vium8795g00026 506 Coils Coil 401 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00026 Vium-Chr8795 140979 148069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00026 70 415 Chloroplast and Mitochondria Gene Families AT2G28800 56.897 3.20e-131 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00026 K03217 - gmx:100815190 803.127