Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00024 ATGGGTTTTTACTGTAGGAGCATTAATGGCTCAAGGAGAAAGTTGGGGTACCTTTCTTGTGGTACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAACTGGGAAAGGAATCGCAAGCGTTTAGCTAATTGTGGTATTGGGTTCGGCAAGAATGCCATTGGTGGAAGAGATGGGAAACTATACGTGGTGACTGACCCCAGTGATAACCCTATGAACCCTAAACCAGGTACATTGAGACATGGTGTTATCCAAGAAGAGCCTTTGTGGATCATTTTCAAGCGTGACATGGTGATCAAGCTACACATGGATCTCCTTGTTAATTCTTACAAAACCATTGACGGAAGAGGAGCAACTATCCACATTGCTGGAGGGCCTTGCATTAAAGTGCACAACAAGAGGAATATCATAATCCATGGCATACACATTCATCATTGCAAACGAGGTGGGAGTGGATATGTGAGTGATTTTCCTAACCATCGCACTTGGAGTGCAAGATCGGACGGTGATGGGATCACAATCTCTGGTGGGAGTCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTGATTGATGTTGTTCATGGTTCAACGGCCATCACCATTTCCAACAATTACATGACACACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGATGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAAGGGCTAGGAGGAAGAATGCCTAGATGCAGGTTTGGATACTTTCATGTGGTGAACAATGATTACATACATTGGCAGCATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATGATGAAGACCATAAAGAGGTGACCAAACATTTTAAATCATCAGAAGGAGAGTGGAAGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGCGCCTTCTTCACACCGTCAGGGGCTGGAGCAACAGCTAGATATGATAGAGCGTCAAGCATGGCAGCAAGACCACCTCTACTTGTGCCTTCAATGACGGCAGGGGCTGGTGCACTTAGATGCAAAAATGGCCACCTGTGCGGACACTAG 1122 0.4545 MGFYCRSINGSRRKLGYLSCGTGNPIDDCWRCDPNWERNRKRLANCGIGFGKNAIGGRDGKLYVVTDPSDNPMNPKPGTLRHGVIQEEPLWIIFKRDMVIKLHMDLLVNSYKTIDGRGATIHIAGGPCIKVHNKRNIIIHGIHIHHCKRGGSGYVSDFPNHRTWSARSDGDGITISGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYIHWQHYAIGGSSSPTIFSQGNRFLAPNDEDHKEVTKHFKSSEGEWKKWNWRSEGDLMLNGAFFTPSGAGATARYDRASSMAARPPLLVPSMTAGAGALRCKNGHLCGH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00024 373 PANTHER PECTATE LYASE 18-RELATED 8 368 IPR045032 GO:0030570
Vium8795g00024 373 SMART amb_all 97 294 IPR002022 -
Vium8795g00024 373 FunFam Pectate lyase 23 364 - -
Vium8795g00024 373 Pfam Pectate lyase 108 288 IPR002022 -
Vium8795g00024 373 SUPERFAMILY Pectin lyase-like 24 362 IPR011050 -
Vium8795g00024 373 Gene3D - 23 364 IPR012334 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 69 94 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 249 268 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 105 121 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 342 365 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 169 190 IPR018082 -
Vium8795g00024 373 PRINTS Pollen allergen Amb family signature 46 63 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00024 Vium-Chr8795 128889 130162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00024 6 371 Polysaccharide Lyase AT5G63180 70.889 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00024 K01728 - gmx:100801136 704.131