Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00020 ATGGGAGAAACCGGAATCATTGTCCGGTTGGACCGGTTGGAAGGAAGCTTAGACCCAAGAGCCGAAGAGTTCAGACCAAGCATGAGCAACCCCGTCATTCAATGCCAATGGTACCCTATTCCTCTCCCTCTACCCTTACCGTTACCTTTACCCTTCCCACACCCTCTTCCTCCTCCTCCGCCTCCTCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTCCGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAGGTCGCCCCCGCCTCGCCAGGCCTCCTCTCCGCCCGCCCCATCTCCGCACACTACGTGCTCCCCTCCTCCTCCTCCATCCCCGACGCCCACAACCAAGGCACCCTCGTGGTCTTCAACTTAGACCCTCACATCTCCACCGACCACCTCCGTCGACTCTTCCACCCTTTCGGTCCCATAAAGGAATTGAGAGATACGCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTCGACACCAGAGACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGCAAATCCACGGGAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAATTCTTCCACCACTCTCCTTCCTCCAAAACCACTCCTCTCGATTTCAATGCCCCACCACCACCCTTCCATCCTTCCCCGCCTCGTCGTTTTGCTGCTCCTCGCTTGCATGCCTCTCACCCTCAATTCTCTCGCAATAAATCATTGCCAAGTCCCGTCAAGGTCCAAGATTCTGTGGATGAGGCAATTGGGTCAATCACTTTGACCGGGGATGTTGGAAATGGGGTTCAAGACCAGCACCACTCACATGCTGGTGGCCCCCCTAGGAGGAATCTTACCAGAAAGCAGAATTGCGAGACCACGCTAGTCGTAGCAACCACAAAGCAGCAGCAGCAACAACAACACCCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAGGCAAAAAAACTCGAAGCTCGCTTTCTAATTAAAGAGGATGCCATTGTCGAATCTGGTCCCAAAGATACTCGAACCACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTGAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATAGAAGACGGCAATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCCACACTCAGGCTCTACAAGGCCTTCCATCTTCAACATTGGGAGGTTTTTAACTCAAGAAAAATATGTGAAGTCACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTACACCACCTCGAGATGGCAGGGAACTCACCGAGCCACTTCCCTTAGTGGGGAACAGCACCAACAAGCAGCATCAACCACCCGTTTCACTTCCGAACTGCGATGATAATGGCGGTGATGACGTGGAAAGCAGCAAAAGCGGCGACGTAGGCGACGACGATGATGATGATGATGACACGAATGCAGAGGTTGGTGGTGAAGGAAGCCTAGAAGAAGACTATGAAGGGTAG 1800 0.5367 MGETGIIVRLDRLEGSLDPRAEEFRPSMSNPVIQCQWYPIPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQVAPASPGLLSARPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHISTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSPSSKTTPLDFNAPPPPFHPSPPRRFAAPRLHASHPQFSRNKSLPSPVKVQDSVDEAIGSITLTGDVGNGVQDQHHSHAGGPPRRNLTRKQNCETTLVVATTKQQQQQQHPQQLPRSRHWKGKQAKKLEARFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIEDGNEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFTPPRDGRELTEPLPLVGNSTNKQHQPPVSLPNCDDNGGDDVESSKSGDVGDDDDDDDDTNAEVGGEGSLEEDYEG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00020 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 233 IPR000504 GO:0003723
Vium8795g00020 599 PANTHER RNA RECOGNITION MOTIF-CONTAINING 394 520 - -
Vium8795g00020 599 MobiDBLite consensus disorder prediction 316 372 - -
Vium8795g00020 599 MobiDBLite consensus disorder prediction 531 599 - -
Vium8795g00020 599 FunFam Terminal EAR1-like 1 346 504 - -
Vium8795g00020 599 FunFam Protein MEI2-like 1 166 258 - -
Vium8795g00020 599 MobiDBLite consensus disorder prediction 338 365 - -
Vium8795g00020 599 CDD RRM3_EAR1_like 398 499 IPR034458 -
Vium8795g00020 599 Gene3D - 161 247 IPR012677 -
Vium8795g00020 599 MobiDBLite consensus disorder prediction 538 554 - -
Vium8795g00020 599 SUPERFAMILY RNA-binding domain, RBD 168 476 IPR035979 GO:0003676
Vium8795g00020 599 Pfam RNA recognition motif 2 398 508 IPR007201 -
Vium8795g00020 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 240 IPR000504 GO:0003723
Vium8795g00020 599 SMART rrm1_1 168 236 IPR000504 GO:0003723
Vium8795g00020 599 MobiDBLite consensus disorder prediction 570 599 - -
Vium8795g00020 599 Gene3D - 339 502 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00020 Vium-Chr8795 100762 103993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00020 169 239 Eukaryotic Initiation Factors Gene Family AT2G23350 37.333 9.31e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00020 - - vum:124847631 1083.94