Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00019 ATGGGTAGCAAAGGTGGAATTTTCCGTTATGCAGATGGAGTTGACAAATTTCTGTTACTGTTTGGGACATTGGGTTGCATTGGAGGTGGATTACAAACCCCTATGACAATGCTTGTTCTTGGTAGTTTGATAAATGATTATGAAGGTGGATCTGAACATTCCGTGCCCGACCAGGTTATAGACAAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAACTGAATACCTTAAATCAGTCCTAAGGCAAGAGGTTGGTTTCTTCGACAAGCAAACCGACTCTTCCACAACTTTCAAAGTTATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGATACCATAGCTGATAAGGTGCCCAATTGTCTGGGTCACCTCTCAGCATTTCTCTCTAGCTTTATAGTCGCACTCTTCCTTTCATGGAGACTTGCAGTGGCTGCTTTTCCATTTTCAATCATGATGATCATGCCGGCAATCATATTTGGGAAGGCCATGAAAGAGCTGGGAAATAAAATGAAGGATGCATATGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCTTCAATTCGCACTGTTTATTCATATGTGGGCGAGAAGCAAACAATGCAAGCGTTCAACTCGGGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTTATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGCAGTGTTCTGGTCCGGACAAAAGGAGAAAGTGGTGGTCCTGTGTTTTGTGCTGAGATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTACTACCCGGATGTTTGAGATGATTGATCGGGTGCCAAGCCTAAATTCTTACAGAGAAAAAGGAAAGGTCTTAACACATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACTGATTCTCCAAGGACTCAATCTGAAAGTGCAGGCCGGAAAAACATTAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTACGGGGAGATATTGCTTGATGGATATGATATACAGACACTTCACGTTAAGTGGTTAAGGTCCCAGATGGGACTGGTCAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAAAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGATGGAGTTATAAGCGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTGATGGATATGAAACTCAAGTGGGACAATTCGGTGCTCAGCTGTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTGATAAGAGAACCCAAAATCCTACTACTTGATGAAGCAACAAGTGCTTTAGATTCACAGTCCGAAAGACTAGTGCAGGAGGCCCTTGAGAAAGCTTCTAGAGGTAGGACAACAATCATCATAGCGCATCGCCTGTCAACAATTCGTAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTCGTTGAATGTGGTTCCCATGATGAGCTACTCCAACTGAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTGCAACAAGCGACAAGTCAAAATGAAATTGCATTGCATACAATAAACAAGACATCCTTAACTATGGAAAATCTTACAAGTTCAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCATTTAGCTCAACACAACCATTTAGTCCCATATATTCAATCAGTGTTGTAGGGTCTAGCTTTGATGACTACGACAGGGAAAACTTTGAGAAATCTTCACATGCTAACTTCTCTCAATGGCGTTTACTAAGAATGAATTCCCCTGAGTGGAAACATGCTTTGCTTGGTTGTTTAGGGGCCATTGGCTCTGGAATATGTCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATGACTCTCTCATCAAATCAAAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATTGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAACATTACAATTTTACCATTATGGGGGAGAGTTTGCTAAAAAGGGTGCGAGAGAATTTGCTAGAGAAGGTGTTGACTTTTGAGATGGGATGGTTTGATCAAGAGGAGAACGGAAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTGAGATCCCTTGTTGCAGAACGAATGTCATTGATAGTTAATATTTCTGTTATGGCTCTGTTGGCTTTTGTACTTAGTTTAATTGTTACGTGGAGGGTGGCTATAGTTATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAGAACATTCTCATGAAAAGTATGGCAGGGAAAGCAAGAAGGGCTCAGAGAGAAGGTAGTCAATTAGCAATGGAAGCTACTGTTAACCACAGGACTATTGCTGCCTTTTCATCTGAGAAAAGGATTTTAAACTTGTTCAGAACTTCTATGGAGGGCCCTAAGAAGGAAAGCATCAAGCAATCATGGATTTCGGGTTCCATTTTGTCAGTCTCATATTTTGTAACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGCCGGTTATTGAATCGAAAGCTGGTGGATTCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCAGAGACAGCAAGCGCAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCTATACTGGATAGGAAAAGTGAGATTGAACCGGAAGATCCTAGACATAGAAAGTGTAAAAATTCTTTGAAGGGCCATATAAAACTTAGAGATGTCTTTTTCTCGTACCCAACAAGGCCAGACCAAATGATTCTCAAGGGTCTCAATCTTGATATTGAAGCAGGCAAAACAGTTGCATTAGTGGGACAAAGTGGGTCGGGTAAATCAACCATCATTGGCTTAATCGAAAGATTTTATGACCCCGTGAAGGGATCCATATCCATAGACAATTGTGACATAAGGGAATTTAACTTAAGAAGTTTGAGAGCACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGAAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCAGCACGTCTTTCAAATGCTCATGAGTTTATAAGGAACATAGAAAACATAGTTGCCTTTAGTAACACAACTTAA 3402 0.4133 MGSKGGIFRYADGVDKFLLLFGTLGCIGGGLQTPMTMLVLGSLINDYEGGSEHSVPDQVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSTTFKVIATITSDAQTIQDTIADKVPNCLGHLSAFLSSFIVALFLSWRLAVAAFPFSIMMIMPAIIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTMQAFNSGLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIATTRMFEMIDRVPSLNSYREKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHVKWLRSQMGLVNQEPILFATSIRENILFGKEGASMDGVISAAKAANAHDFIVKLPDGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALEKASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGAYRKMLQLQQATSQNEIALHTINKTSLTMENLTSSNSRWQSSPTHHAFSSTQPFSPIYSISVVGSSFDDYDRENFEKSSHANFSQWRLLRMNSPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSLIKSKIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDQEENGSAAICARLATEANLVRSLVAERMSLIVNISVMALLAFVLSLIVTWRVAIVMIAMQPLIIACFYSKNILMKSMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILSVSYFVTTASITLTFWYGGRLLNRKLVDSKHLLQVFLILMGTGRQIAETASATSDIAKSGRAISSVFAILDRKSEIEPEDPRHRKCKNSLKGHIKLRDVFFSYPTRPDQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPVKGSISIDNCDIREFNLRSLRAHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFIRNIENIVAFSNTT 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00019 1133 PANTHER ABC TRANSPORTER B FAMILY 7 689 IPR039421 -
Vium8795g00019 1133 SMART AAA_5 371 557 IPR003593 GO:0016887
Vium8795g00019 1133 SMART AAA_5 1026 1133 IPR003593 GO:0016887
Vium8795g00019 1133 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016020
Vium8795g00019 1133 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8795g00019 1133 FunFam ABC transporter B family member 4 334 592 - -
Vium8795g00019 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1124 IPR027417 -
Vium8795g00019 1133 Gene3D ABC transporter type 1, transmembrane domain 643 985 IPR036640 GO:0005524|GO:0016020
Vium8795g00019 1133 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Vium8795g00019 1133 Gene3D ABC transporter type 1, transmembrane domain 7 602 IPR036640 GO:0005524|GO:0016020
Vium8795g00019 1133 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Vium8795g00019 1133 Pfam ABC transporter 1017 1115 IPR003439 GO:0005524
Vium8795g00019 1133 Gene3D - 334 586 IPR027417 -
Vium8795g00019 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 585 IPR027417 -
Vium8795g00019 1133 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Vium8795g00019 1133 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Vium8795g00019 1133 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Vium8795g00019 1133 SUPERFAMILY ABC transporter transmembrane region 663 983 IPR036640 GO:0005524|GO:0016020
Vium8795g00019 1133 Gene3D - 986 1128 IPR027417 -
Vium8795g00019 1133 Pfam ABC transporter transmembrane region 20 275 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8795g00019 1133 Pfam ABC transporter transmembrane region 677 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8795g00019 1133 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 284 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8795g00019 1133 Pfam ABC transporter 362 511 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00019 Vium-Chr8795 91450 96645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00019 20 595 Calmodulin-binding Proteins AT2G36910 36.317 8.73e-106 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00019 K05658 - gmx:100804664 1958.73