Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8795g00002 ATGGGTCTCTCAAATTTTCCAAGTGCATCTGAAGGGGTGCTTCCTGTGCTGGTGATAAACACGGTTCTCTCTGTGGCTGTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTTGTCGGAGGCAGTCCGAGTCCAAGTTCCGGTGCGAACAGCGAACAAGAATCTCATGAAAGTTCACGAGAAAGGAGGGTGTCGATAACGCAGTTCAAGGCATTGACGAAGGACATAGGAAGAAGAAGCAGTGGCAGTGGATGGAAGGGTGTGACCATGGTAGAGTGCTGCGTTTGCTTGTGTCGTTTTGAAGGCAATGAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGCTGCTTGGACAAATGGTTTCATAACAAACACGCCTCTTGCCCCTTGTGTCGTTCTATGGATTAG 417 0.482 MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMLQVVGGSPSPSSGANSEQESHESSRERRVSITQFKALTKDIGRRSSGSGWKGVTMVECCVCLCRFEGNEEVSELPCKHYFHRGCLDKWFHNKHASCPLCRSMD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8795g00002 138 MobiDBLite consensus disorder prediction 40 63 - -
Vium8795g00002 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 138 IPR013083 -
Vium8795g00002 138 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Vium8795g00002 138 SMART ring_2 93 134 IPR001841 -
Vium8795g00002 138 SUPERFAMILY RING/U-box 92 136 - -
Vium8795g00002 138 CDD RING-H2_PA-TM-RING 92 135 - -
Vium8795g00002 138 PANTHER - 1 137 IPR044249 -
Vium8795g00002 138 Pfam Ring finger domain 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8795g00002 Vium-Chr8795 19925 20726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8795g00002 1 136 C3H Transcription Factor Family AT2G04240 33.974 3.68e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8795g00002 K16285 - gmx:100811790 190.274