Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium877g00010 ATGGCTGGGATTTGTTGCGGCGTTGTTGGAGAGGCCGGAGAGACTTCTTCTCCGACCAAGCCTACCTCGCGCCCTTTCTCTCGCCGGAGTTTGGACCAACTGCCTTTAAAATACATCGCCGGAGTGGCAATCCCGGCGCCGGAGAATCCTCGGAAGCGCCAGAAGCTGGATCAGCGCGCTTCTCCGGCGCGGGAGTGTGAAAACGCGATTCAGAGTTCCGAATCGAAGGAAGTCGAGGATGTCTCGCATACGAATTGTTTGAAGGTTCCTACTTTGGACTTGACAACGGGTGTGGTCGAAGAGGTGTGTCCGAAGTATGGGGTAACCTCGGTTTGTGGCAGGAGGAGGGACATGGAAGACGCAGTTTCAGTGCATCCTTCGTTTTGCCTGGAAAGTCGTGATGAAGATCAGAAAGGGTTTCATTTCTTCGCTGTTTTTGACGGCCACGGATGCTCACACGTGGCGACTATGTGCAAGGAGAGGTTACACGAGATAGTGAAGGAGGAGATTCAAAAAGCGAAAGATAATTTGGAATGGGAATCGACGATGAAGAAGAGTTTCGCTCGAATGGACGACGAGGTGCAAAGGTGGAGCAGAAACAATGAGACACGCGCATGCAGGTGCGAGCTTCAGACCCCGCGCTGCGACGCCGTTGGCTCCACCGCGGTCGTCGCCGTCGTCACGTCGGAAAAGATCATCGTGGCCAACTGCGGCGACTCACGCGCCGTGCTCTGCCGGAACAGTGCACCCGTTCCGCTCTCCGACGACCACAAGCCGGATCGACCCGACGAGTTGCTTCGGATCCAAGATGCGGGCGGGCGCGTGATATATTGGGACGGGCCTAGAGTGCTTGGGGTCTTGGCCATGTCAAGAGCTATAGGAGACAACTATCTGAAGCCGTATGTAATTTCGGAACCGGAGGTAACGGTAACGGAACGGAGTGAAGAGGATGAGTGTTTGATAATAGGGAGTGACGGGCTTTGGGACACGGTGCAAAACGACACGGCGTGTAAGGTGGCGCGGATGTGTCTAAACGCGCAGAAGGCGGCGGCGTCTCCGGGGAGGGAGTCGGCGGTGGAGTGCTCCGACAAGGCGTGCTCCGACGCCTCCATTCTGCTGACGAAGTTGGCGTTGGTGAGGCACAGTTCCGACAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATGATCGTGAACAATAA 1203 0.5594 MAGICCGVVGEAGETSSPTKPTSRPFSRRSLDQLPLKYIAGVAIPAPENPRKRQKLDQRASPARECENAIQSSESKEVEDVSHTNCLKVPTLDLTTGVVEEVCPKYGVTSVCGRRRDMEDAVSVHPSFCLESRDEDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEIQKAKDNLEWESTMKKSFARMDDEVQRWSRNNETRACRCELQTPRCDAVGSTAVVAVVTSEKIIVANCGDSRAVLCRNSAPVPLSDDHKPDRPDELLRIQDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSEEDECLIIGSDGLWDTVQNDTACKVARMCLNAQKAAASPGRESAVECSDKACSDASILLTKLALVRHSSDNVSVVVVDLRRDDREQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium877g00010 400 MobiDBLite consensus disorder prediction 15 29 - -
Vium877g00010 400 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vium877g00010 400 SMART PP2C_4 93 391 IPR001932 -
Vium877g00010 400 SUPERFAMILY PP2C-like 88 394 IPR036457 -
Vium877g00010 400 CDD PP2Cc 105 350 IPR001932 -
Vium877g00010 400 Gene3D - 95 400 IPR036457 -
Vium877g00010 400 FunFam Protein phosphatase 2C 37 100 400 - -
Vium877g00010 400 ProSiteProfiles PPM-type phosphatase domain profile. 105 393 IPR001932 -
Vium877g00010 400 Pfam Protein phosphatase 2C 105 361 IPR001932 -
Vium877g00010 400 PANTHER PROTEIN PHOSPHATASE 69 393 IPR015655 GO:0004722|GO:0006470
Vium877g00010 400 MobiDBLite consensus disorder prediction 9 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium877g00010 Vium-Chr877 78281 80308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium877g00010 104 395 PP2C-type Phosphatase Gene Family AT1G07430 63.836 2.53e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium877g00010 K14497 - gmx:100781388 602.438