Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium877g00006 ATGTTTGTGAGGAGAGAACAAAAGATGAAGTCACAGTCACAGCATGAAAAACCAGCAATTATTGGAGATGACAGAAAGAACAATTGGGAAGAAAGGGCTTTTGCAGAAGATGCAGTTGGTAGCATGTGGCCTCCAAGACCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCACAAGCTCTTGGAGGTCACATGAATATTCACAGAAGGGACAGGGCTAGGCTCAAACAAAACCTTAACCCTCATTACCAAAATTATCACAGAATCAAATCCTTATTAGGTAATAATAATCATCCTTTTTCTTCACCACTCATCTCCACCCAGATCAATTGTGGTCTTACTCATGCTCATAGCTATTCTAGCCAAGCAACTACAATTTCTACGACCAGATCACTCTCATGTATATCCACACAAGAAAATAAATTCTTGGAATGTGGTAATTTTGTTGAAACAAGTTTGTCTATGGGTATGACTACCGTGTTTGGCCAAAATTCATCACCAAACATCAGTTGCAAGAGACTAAAAAACAACATTTCTTCTCTTCCTATTTTCCTCAGACCATGTTCAAAGGACAAAGGCCTGCCTTTTCAACCTGTGGAAATCTCAGTAGAACTTCATCACGCAATGGAAGACTTGGATCTTGAACTCAGGCGTGTTGTTGGCATAATCCATGAAAAAAAAATTTAA 693 0.3925 MFVRREQKMKSQSQHEKPAIIGDDRKNNWEERAFAEDAVGSMWPPRPYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLNPHYQNYHRIKSLLGNNNHPFSSPLISTQINCGLTHAHSYSSQATTISTTRSLSCISTQENKFLECGNFVETSLSMGMTTVFGQNSSPNISCKRLKNNISSLPIFLRPCSKDKGLPFQPVEISVELHHAMEDLDLELRRVVGIIHEKKI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium877g00006 230 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Vium877g00006 230 SMART c2h2final6 48 70 IPR013087 -
Vium877g00006 230 Pfam C2H2-type zinc finger 48 72 - -
Vium877g00006 230 PANTHER OS07G0101800 PROTEIN 24 219 - -
Vium877g00006 230 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Vium877g00006 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Vium877g00006 230 MobiDBLite consensus disorder prediction 1 27 - -
Vium877g00006 230 Gene3D Classic Zinc Finger 43 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium877g00006 Vium-Chr877 41391 49063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium877g00006 16 79 C2H2 Transcription Factor Family AT2G37740 68.116 1.83e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium877g00006 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium877g00006 - - vra:106763320 313.538