Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium877g00002 ATGCCCTACATCGTTGCTCTATTATTGCTTCATTGTTACACCACCATTGTGCCTTCGCCACCACCATTGCAATCAACTCTGAGCCCCACGTCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGAAGGCTGAGTGGATCCAATTTGGGAAACTGGAGAACCAGCTGGAGAAGAAGCACTACAGAGGAGTCCGTCAGCGGCCTTGGGGAAAGTTCCCCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACTGCCATCGAGGCCGCCAAGGCTGACGACCGTGCTGCCTTCAGGCTCTACGGCTCAAAGGCCATCCTCAACTTCCCACTCGAAGCAGGCGTGATGGACGCAACCGTTGAGGCCAAAGGCGAAAGGAAGTGGCGGCACCAGGAGGAGGAGGTAGAGGAAGTGAAGCCGGTGGAGAAGAATGAAAAAATGACAGAACAAGAGGTGAACTATTTTTGGGAGATGTTGTTAACGCCTAAGGTTGAAGATGATCAAGCGTAA 558 0.5269 MPYIVALLLLHCYTTIVPSPPPLQSTLSPTSLHKKPQLNRKPSLQISLPKKAEWIQFGKLENQLEKKHYRGVRQRPWGKFPAEIRDSNKRGSRVWLGTFDTAIEAAKADDRAAFRLYGSKAILNFPLEAGVMDATVEAKGERKWRHQEEEVEEVKPVEKNEKMTEQEVNYFWEMLLTPKVEDDQA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium877g00002 185 SUPERFAMILY DNA-binding domain 68 128 IPR016177 GO:0003677
Vium877g00002 185 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Vium877g00002 185 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Vium877g00002 185 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Vium877g00002 185 Gene3D AP2/ERF domain 67 128 IPR036955 GO:0003700|GO:0006355
Vium877g00002 185 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Vium877g00002 185 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Vium877g00002 185 FunFam Ethylene-responsive transcription factor 2 67 128 - -
Vium877g00002 185 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Vium877g00002 185 PANTHER DNA-BINDING DOMAIN 58 149 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium877g00002 Vium-Chr877 7688 11399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium877g00002 40 165 AP2-EREBP Transcription Factor Family AT5G47230 60.000 1.64e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium877g00002 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium877g00002 K09286 - gmx:100816039 186.808