Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium877g00001 ATGGAAAGCCCCACGTCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGAAGGCTGAGTGGATCCAATTTGGGAAACTGGAGAACCAGCTGGAGAAGAAGCACTACAGAGGAGTCCGTCAGCGGCCTTGGGGAAAGTTCCCCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACTGCCATCGAGGCCGCCAAGGCTGACGACCGTGCTGCCTTCAGGCTCTACGGCTCAAAGGCCATCCTCAACTTCCCACTCGAAGCAGGCGTGATGGACGCAACCGTTGAGGCCAAAGGCGAAAGGAAGTGGCGGCACCAGGAGGAGGAGGTAGAGGAAGTGAAGCCGGTGGAGAAGAATGAAAAAATGACAGAACAAGAGGTGAACTATTTTTGGGAGATGTTGTTAACGCCTAAGGTTGAAGATGATCAAG 478 0.5377 MESPTSLHKKPQLNRKPSLQISLPKKAEWIQFGKLENQLEKKHYRGVRQRPWGKFPAEIRDSNKRGSRVWLGTFDTAIEAAKADDRAAFRLYGSKAILNFPLEAGVMDATVEAKGERKWRHQEEEVEEVKPVEKNEKMTEQEVNYFWEMLLTPKVEDDQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium877g00001 159 PANTHER DNA-BINDING DOMAIN 38 124 IPR044808 GO:0003700|GO:0009873
Vium877g00001 159 ProSiteProfiles AP2/ERF domain profile. 43 101 IPR001471 GO:0003700|GO:0006355
Vium877g00001 159 Gene3D AP2/ERF domain 42 103 IPR036955 GO:0003700|GO:0006355
Vium877g00001 159 MobiDBLite consensus disorder prediction 1 20 - -
Vium877g00001 159 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Vium877g00001 159 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vium877g00001 159 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Vium877g00001 159 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Vium877g00001 159 SUPERFAMILY DNA-binding domain 43 103 IPR016177 GO:0003677
Vium877g00001 159 FunFam Ethylene-responsive transcription factor 2 42 103 - -
Vium877g00001 159 MobiDBLite consensus disorder prediction 1 19 - -
Vium877g00001 159 SMART rav1_2 43 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium877g00001 Vium-Chr877 2084 2785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium877g00001 15 140 AP2-EREBP Transcription Factor Family AT5G47230 60.000 1.71e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium877g00001 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium877g00001 K09286 - gmx:100816039 184.882