Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8774g00003 ATGGATCATCTTGGAATTCAACCCCCTTCAACCAAGGTTGAAAGAAGGCTCGTTGAGAAGAACAGAAGAAACCAGATGAAGATCCTCTTCAACAAACTCAATTCTCTTCTCCCTAGCTACAACCCCAAGGAAGTATTACCACTGCCTGATCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCGAAGGTGAAGATGGCACAAGAGAAGAAAGAGAAGGGTGCTAAGAAAAGATACCGTGGTTGCTTCTCCAACAATAACGGTGCTAATTTAGCCGCAGCACCACTCCCAAAATCTCCACAACTTGAGATTCAAGAAGTGGGTTCCTCCCTGCAAGTTGTTCTGACTACAGGGATGGATAACCAGTTCATATTCTATGAAATCATTCGAATGCTGCATGAAGAGAACATAGATGTTAGAAGTCTCAATTCCTCACTCACTGGAGACTCGGTGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTCGGAGCCGCCAAAGTAAGTGAGAGGTTGAAAAGGTTTGTAAATGGATCATACAGTGACGTGGAAACACAACACGAGTGGTGGGATTTTGATATTGGCACTGATGATATCTGGGGTTTCTAG 624 0.4359 MDHLGIQPPSTKVERRLVEKNRRNQMKILFNKLNSLLPSYNPKEVLPLPDQVDEAINYIKSLEAKVKMAQEKKEKGAKKRYRGCFSNNNGANLAAAPLPKSPQLEIQEVGSSLQVVLTTGMDNQFIFYEIIRMLHEENIDVRSLNSSLTGDSVLHVVHAEIPQSFLQFGAAKVSERLKRFVNGSYSDVETQHEWWDFDIGTDDIWGF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8774g00003 207 Gene3D - 7 84 IPR036638 GO:0046983
Vium8774g00003 207 FunFam Transcription factor bHLH162 4 86 - -
Vium8774g00003 207 Coils Coil 52 79 - -
Vium8774g00003 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 77 IPR036638 GO:0046983
Vium8774g00003 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Vium8774g00003 207 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Vium8774g00003 207 SMART finulus 16 68 IPR011598 GO:0046983
Vium8774g00003 207 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8774g00003 Vium-Chr8774 12634 13799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8774g00003 10 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.813 4.77e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium8774g00003 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8774g00003 - - vun:114170573 364.77