Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8771g00031 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCCGAAGACCCTTCCTCCACTTGGGACTTCTCCTACCTTCTAGACTTCAACCTCGACGAAGACCACACCGATAATTCTCTCCCATTCTCTTCTCTCTTCAACGACGCTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGATCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCAGGTCCCCTGCGCCTGCCCCGAACTTGACGCCAAACTCGAGGATGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACTGCTCGTGCCTCCTCATCCGCTCGATGCCAGGTCCCTGGTTGTGAGGTCGATATCTCCGAACTCAAAGGCTATCACCGCCGACACAGTGTCTGCCTCCGCTGCGCCAATGCCACCACTGTTGTCCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGATGAAGGGAAACGAAGTTGCAGAAGGAAGTTAGAACGGCATAACACGCGAAGGCGGAGAAAGCCCCTGGTGGAATCGGGAGGTGGTGCTATCGCCGAACTTGAGGCCGTTACTCAGAATGAGGAAAACAATTATGATGCGGTAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACGACATAGTAGTGTTGCCAGATCATGGAGAGGAACCTGTTCCCATTCTGGTATCAGCTCCTGATGCCCAGAATGTTAACAGTGACAGCGTTGTGTCTTTGCCTGTTTCTGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTACACGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCAGCAGAGTTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGTTATATCCGCCCTGGGTGCACCATTTTGACAAGTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACGGAAAGAATCATTGGAACATGTGAACAAACTTGTTGCCCCGGGAAATATGCTATCTGGAAGAGGGACTGCACTAGTTCATCTTAATGACATAGTCTTCCGTGTTATGAAAGATGGAACCTCTGTGACGAAAGTCGAGGTTAACTTGCAGGCACCTAGGCTTCATTATGTTCACCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTCCAGCTTCTTGTATCGTTTTCGGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCCCCACATAACTGGACTGAAGAAAATATTTCTTGCGCTTTTGACAATCAGTTGTACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTCTGGGCCTGCATTTATTGAGGTGGAGAATGAATCCGGTTTATCAAACTTTATTCCTGTACTCATTGCTGATAAAGAAACTTGTTCTGAAATGAAGATACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAATCAATTCCGGTCTGCATCAGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGCCACACATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATTACAGCTTCACAAATCCAAAGATATTGTCACTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGGAAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATTTTGTGATTAATACGACTAGTGATGTGGATACAAGGCAACTCCTGAATCACATACATAATGCTCAAATTACCATATTTCAGAAACATCAGAAAAATGGAAGTATTATTGTGCAGCCTGAAATGGAAGGCTTTAGACTTGCTCAGGGTTGCTCTCATGATAACAAGATCTCAGTTGCTATTAACAGTCAGGGTATCCTGTCAAGAGCAGATGCAAAGTGGGGAGTGCTGAAAAATCTAACTTGTAGTGACAAAAATGAAAGAATACCTCTTTTAAAGAGAGATATTATAATGAATGTGGAAGAGTTGCCTGAAATATATGGTCGTGGATGTTTAGGCAGGGGGTTGTTGACCCCTCGACCAGCTATTTTTGTGATGGTTTCGATTGCTGTTTGTCTTGGGGTTTGTGTAGCCGTCCTTCATCCAGGAGGGGTTACTGAGTTAGCAGTATCTGTTAGAAGGTGTTTGTTTAACTATTAG 2295 0.4436 MEPQQSLPPMDDSEDPSSTWDFSYLLDFNLDEDHTDNSLPFSSLFNDAPEIPNDRVRKRDPRLTCSNFLAGQVPCACPELDAKLEDEGLPGKKRARTARASSSARCQVPGCEVDISELKGYHRRHSVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVESGGGAIAELEAVTQNEENNYDAVAGKDCSNLSNEINDIVVLPDHGEEPVPILVSAPDAQNVNSDSVVSLPVSGETRVNSGNTSNSPSYCDNKSAYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPNIMWINLRKESLEHVNKLVAPGNMLSGRGTALVHLNDIVFRVMKDGTSVTKVEVNLQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFQLLVSFSGKYLKCEYCVPSPHNWTEENISCAFDNQLYKIYVPHTEESLSGPAFIEVENESGLSNFIPVLIADKETCSEMKILQQKLDSSLLSNQFRSASGGSICSSCETFTLSHTSSDLLVDIAWLLKDTTSENFDRVITASQIQRYCHLLDFLMCNESTVMLEKILPNLIILTESMKSNFVINTTSDVDTRQLLNHIHNAQITIFQKHQKNGSIIVQPEMEGFRLAQGCSHDNKISVAINSQGILSRADAKWGVLKNLTCSDKNERIPLLKRDIIMNVEELPEIYGRGCLGRGLLTPRPAIFVMVSIAVCLGVCVAVLHPGGVTELAVSVRRCLFNY 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8771g00031 764 Gene3D - 101 167 IPR036893 GO:0003677|GO:0005634
Vium8771g00031 764 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Vium8771g00031 764 Pfam SBP domain 106 180 IPR004333 GO:0003677
Vium8771g00031 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 581 IPR044817 GO:0003677
Vium8771g00031 764 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8771g00031 Vium-Chr8771 140284 150818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8771g00031 8 758 SBP-box Gene Family AT5G18830 45.342 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium8771g00031 SBP 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8771g00031 - - gmx:100776034 1256.51