Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8771g00020 ATGAACGATGAACGAGAACCAACAGCTTCCTCGAGCAATGGCGTCCCAAAGACAGAAAGAAAACAAGTAGTTGAAAGGGATAAATCTATTTTTAGAGGCAGGCGTCCACGAACTGGGTTTTCTGATTCATTCTCAAGTATTGAATTGGAAGCATTAGACAATGAAGAGGGAGGAGCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGACCAGCACTTCAGATTCGGAGGGTCAGGGGTCTTTAGTAGGCAATTCACCTAATGCTAATAATCAATGGCGTGGTTTCTTCAAGTTACTGAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAACTCACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACATGTGTCCATCTTTGAATTCTCCAGCTCTTCGCTCATCTTTTGACAGTGAGTTTGGCTACTTAAAATCTTCATGGAAAAACTTCACTCTCGCAGAGATCTTGACTGCAACAAACGACTTTAGCGAAGCTAATTTGATTGGGGAGGGAGGCTATGCGGAGGTTTATTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACCGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCATCCCAATATAGCTAGATTGATCGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAGCTGAATTGGAGCCTCAGATATAAGATTATTCTGGGGACTGCTGAGGGACTCCGCTATCTGCATGAGGGTTGTCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTGAGCCACAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACAGATGTGTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGTCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAATAATATCAAAGCCCTAGTAGATCCAGTTTTGGCTGATGCTTACAATGAAGAGCAGATGGAACTTGTAACCTTAACAGCTTCTCTATGTGTAGACCAGTCTTCGATTCAGCGACCAGATATGAGTCAGGTGTTGGAGATACTAAGAGGGGAAGAAGATATCCTGAGAATCATGAAAGAACGGACCAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTGTTTGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGCTCAGTTACAGATGAATGA 1491 0.4212 MNDEREPTASSSNGVPKTERKQVVERDKSIFRGRRPRTGFSDSFSSIELEALDNEEGGAPEHSPRSQGSETPSSRTSTSDSEGQGSLVGNSPNANNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDMCPSLNSPALRSSFDSEFGYLKSSWKNFTLAEILTATNDFSEANLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLADAYNEEQMELVTLTASLCVDQSSIQRPDMSQVLEILRGEEDILRIMKERTKVKLQRTYSEELFDAEEYNSTKFLNERDRHMETILGSVTDE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8771g00020 496 MobiDBLite consensus disorder prediction 64 94 - -
Vium8771g00020 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Vium8771g00020 496 Pfam Protein tyrosine and serine/threonine kinase 180 440 IPR001245 GO:0004672|GO:0006468
Vium8771g00020 496 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 146 250 - -
Vium8771g00020 496 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Vium8771g00020 496 MobiDBLite consensus disorder prediction 1 18 - -
Vium8771g00020 496 ProSiteProfiles Protein kinase domain profile. 176 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8771g00020 496 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 253 455 - -
Vium8771g00020 496 MobiDBLite consensus disorder prediction 19 35 - -
Vium8771g00020 496 MobiDBLite consensus disorder prediction 1 94 - -
Vium8771g00020 496 Gene3D Transferase(Phosphotransferase) domain 1 253 465 - -
Vium8771g00020 496 PANTHER OS08G0249100 PROTEIN 42 475 IPR046958 -
Vium8771g00020 496 SMART serkin_6 176 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8771g00020 496 Gene3D Phosphorylase Kinase; domain 1 149 250 - -
Vium8771g00020 496 SUPERFAMILY Protein kinase-like (PK-like) 161 462 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8771g00020 Vium-Chr8771 83461 87249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8771g00020 147 447 Receptor kinase-like Gene Family AT1G53420 40.129 2.31e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium8771g00020 PK_Tyr_Ser-Thr 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8771g00020 - - gmx:102670300 844.728