Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8771g00019 ATGAACGATGAACGAGAACCAACAGCTTCCTCGAGAGAATTTTATGTTGGCAGCAATGGCGTCCCAAAGACAGAAAGAAAACAAGTAGTTGAAAGGGATAAATCTATTTTTAGAGGCAGGCGTCCACGAACTGGGTTTTCTGATTCATTCTCAAGTATTGAATTGGAAGCATTAGACAATGAAGAGGGAGGAGCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGACCAGCACTTCAGATTCGGAGGGTCAGGGGTCTTTAGTAGGCAATTCACCTAATGCTAATAATCAATGGCGTGGTTTCTTCAAGTTACTGAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAACTCACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACATGTGTCCATCTTTGAATTCTCCAGCTCTTCGCTCATCTTTTGACAGTGAGTTTGGCTACTTAAAATCTTCATGGAAAAACTTCACTCTCGCAGAGATCTTGACTGCAACAAACGACTTTAGCGAAGCTAATTTGATTGGGGAGGGAGGCTATGCGGAGGTTTATTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACCGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCATCCCAATATAGCTAGATTGATCGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAGCTGAATTGGAGCCTCAGATATAAGATTATTCTGGGGACTGCTGAGGGACTCCGCTATCTGCATGAGGGTTGTCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTGAGCCACAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACAGATGTGTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGTCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAATAATATCAAAGCCCTAGTAGATCCAGTTTTGGCTGATGCTTACAATGAAGAGCAGATGGAACTTGTAACCTTAACAGCTTCTCTATGTGTAGACCAGTCTTCGATTCAGCGACCAGATATGAGTCAGGTGTTGGAGATACTAAGAGGGGAAGAAGATATCCTGAGAATCATGAAAGAACGGACCAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTGTTTGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGCTCAGTTACAGATGAATGA 1509 0.4201 MNDEREPTASSREFYVGSNGVPKTERKQVVERDKSIFRGRRPRTGFSDSFSSIELEALDNEEGGAPEHSPRSQGSETPSSRTSTSDSEGQGSLVGNSPNANNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDMCPSLNSPALRSSFDSEFGYLKSSWKNFTLAEILTATNDFSEANLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLADAYNEEQMELVTLTASLCVDQSSIQRPDMSQVLEILRGEEDILRIMKERTKVKLQRTYSEELFDAEEYNSTKFLNERDRHMETILGSVTDE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8771g00019 502 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Vium8771g00019 502 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 259 461 - -
Vium8771g00019 502 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 152 256 - -
Vium8771g00019 502 MobiDBLite consensus disorder prediction 25 41 - -
Vium8771g00019 502 ProSiteProfiles Protein kinase domain profile. 182 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8771g00019 502 SUPERFAMILY Protein kinase-like (PK-like) 167 468 IPR011009 -
Vium8771g00019 502 Gene3D Phosphorylase Kinase; domain 1 155 256 - -
Vium8771g00019 502 Pfam Protein tyrosine and serine/threonine kinase 186 446 IPR001245 GO:0004672|GO:0006468
Vium8771g00019 502 MobiDBLite consensus disorder prediction 1 100 - -
Vium8771g00019 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Vium8771g00019 502 SMART serkin_6 182 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8771g00019 502 Gene3D Transferase(Phosphotransferase) domain 1 259 471 - -
Vium8771g00019 502 PANTHER OS08G0249100 PROTEIN 58 481 IPR046958 -
Vium8771g00019 502 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8771g00019 Vium-Chr8771 83459 87250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8771g00019 153 453 Receptor kinase-like Gene Family AT1G53420 40.129 2.77e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium8771g00019 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8771g00019 - - gmx:102670300 851.277