Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8771g00007 ATGGGGTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCGTCAGTGGGTGGCTCCAGGGACTTCAGAGAACTTGGCCCTTATGGTACCCAGAGGAAGCACATTCTCACTCAGAGTTCACTGCAGTTTGTTCCCGTTCCTTCCCATAACTTCACTTTAGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAGGAAAACCAGGATAGTTTCTGCATTAGGACACAGTTCCAAGGTAACCCAAGTGTCCATTTCTTCGGTGTTTATGATGGGCATGGCGAATTTGGTGCCCAGTGTTCGAACTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCAAGTGACTTTGCATTGTTGGAGGACCCTGTCAAGGCTTACACTTCTGCTTTCTTGACCACGAATGAGGACTTGCATAAGAATGAGATTGACGATTCCTTGAGTGGCACCACTGCAATTACGGTGCTGGTCATTGGGGACACCCTTTATGTTGCTAATGTCGGTGATTCGAGAGCAGTGCTGGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCACTGATCAGACACCATTTAGAAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGACGGTGCCTGGAGCTGCATTTACAAGGAGTGTAGGGGATATGTTGGCTGAGACTATCGGTGTAATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGGGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCATATAAACTATGGTTAGAACACGATGGCCGAACTGATGATATAACAATTATTATCGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGGACTTGGATCAGGAGAGGTCAATGTCAGCACTGTAACAAGGACCAAGAGCAAGAGGGTAAAGGGAGCATCTGAATTATCTGCCACAACTGGGTTAGATGTTTATCGTTCGGTCAGGAATGGCTTCTCTGATTTACAGTCCTGTCCACAGCATGTGGTCTCAACTAAAAGCCCAGCCATAGTGGTCCCTTCTCCAGCTTGTCCAACATCTGTTACATAG 1281 0.4684 MGCVHGKCCTRYPSPSVGGSRDFRELGPYGTQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSVHFFGVYDGHGEFGAQCSNFVKDRLVENLSSDFALLEDPVKAYTSAFLTTNEDLHKNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSTDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGTVPGAAFTRSVGDMLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHDGRTDDITIIIVQIKGLSNSGTSGLGSGEVNVSTVTRTKSKRVKGASELSATTGLDVYRSVRNGFSDLQSCPQHVVSTKSPAIVVPSPACPTSVT 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8771g00007 426 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Vium8771g00007 426 CDD PP2Cc 71 345 IPR001932 -
Vium8771g00007 426 SMART PP2C_4 51 343 IPR001932 -
Vium8771g00007 426 PANTHER PROTEIN PHOSPHATASE 73 344 IPR015655 GO:0004722|GO:0006470
Vium8771g00007 426 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Vium8771g00007 426 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vium8771g00007 426 Gene3D - 47 347 IPR036457 -
Vium8771g00007 426 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Vium8771g00007 426 MobiDBLite consensus disorder prediction 223 239 - -
Vium8771g00007 426 MobiDBLite consensus disorder prediction 223 242 - -
Vium8771g00007 426 Pfam Protein phosphatase 2C 73 320 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8771g00007 Vium-Chr8771 21273 25531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8771g00007 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.000 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8771g00007 - - gmx:100777670 808.135