Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8769g00001 ATGGAGAAAGTGCAAGGATGGAAGGATGCTCTAACCGAAGCTGCTGGACTCTCCGGTTGGGATTCAAACGTTATCAGGTCAGAAAACACACTTGTTGAAGGAATTGTGGAAGATATTATGAGAAAATTGAATCTTTATTCCATTAGTTATGATCCAGGAACTATCGGCATTGAAAAACATATTGAAAGCATTCAGTTATTGATGCATTTTGAGTCATCAGATATTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGAAAAACTACAATTTCTGAACAAATATATCACACATTTACAATGCAATTTGATTCCAGAAGCCTTGTTTTAGACACTCAAGAAAAAATAAAAAGAGATGGAATAGACGCTGTCAGAAAAAAATATATGCCCGAGCTTCTAAATGAAGTACCATCCCTCAAAGGAATGAGGATTCTCATCATTCTTGATGATGTTACTGATTCGGTTCAACTTAAACAATTGCTAGGAAGGTGTGATAGTTTTGGACAAG 508 0.3661 MEKVQGWKDALTEAAGLSGWDSNVIRSENTLVEGIVEDIMRKLNLYSISYDPGTIGIEKHIESIQLLMHFESSDIRIIGIWGMGGIGKTTISEQIYHTFTMQFDSRSLVLDTQEKIKRDGIDAVRKKYMPELLNEVPSLKGMRILIILDDVTDSVQLKQLLGRCDSFGQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8769g00001 169 PRINTS Disease resistance protein signature 77 92 - -
Vium8769g00001 169 PRINTS Disease resistance protein signature 138 152 - -
Vium8769g00001 169 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 168 IPR044974 GO:0006952
Vium8769g00001 169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 164 IPR027417 -
Vium8769g00001 169 Pfam NB-ARC domain 59 159 IPR002182 GO:0043531
Vium8769g00001 169 Gene3D - 41 167 IPR027417 -
Vium8769g00001 169 Gene3D - 1 40 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8769g00001 Vium-Chr8769 9 1008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8769g00001 7 168 WRKY Transcription Factor Family AT4G12020 34.270 6.32e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8769g00001 - - vum:124825007 323.939