Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8768g00003 ATGGCCTTTGAGCACTGCGTTTCGCAGCAATGGAAAACCATCCCTAGCCCCGTGACTTTGACAGAAAATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCGCATGAACCAATTGTTACCCTTTGTGGTCACCTATACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGCATCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGCAAGGAAGATATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGCCATAGCTCCTAGTGACCGTGATGTGAAGGCTTCCTATAGAGGTGTTTTCATCCCACCAAGACCACCTGCTTTGGGTACTCAATCTCTCATGCCAACATCATCTCAAAGTGGCCAGCAACTTCCATATCGCAATCCGTATCAGAGTCAGCATTTCAATCCTCCTTTATACCAAGAAGAGGATGAATCATCAACACAAATGCTTCTCAGTCCTGGTGCCATGGCACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATGTATACACTTACCCAAATTCTTATCACCTGGCAGGAAGTAACAGCCCCAGGTTGAGAAGGCAAGAGATCCAGGCAGACAAATCACTGAACAGAATTTCTATTTTTCTCTTCTGTTGCTTCCTTCTGTGTCTCATCGTCTTCTAA 723 0.4647 MAFEHCVSQQWKTIPSPVTLTENFDGCFDCNICLDFAHEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAPSDRDVKASYRGVFIPPRPPALGTQSLMPTSSQSGQQLPYRNPYQSQHFNPPLYQEEDESSTQMLLSPGAMAPGFPHLVVGMFGEMFYTRVFGNSENVYTYPNSYHLAGSNSPRLRRQEIQADKSLNRISIFLFCCFLLCLIVF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8768g00003 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium8768g00003 240 SMART ring_2 30 76 IPR001841 -
Vium8768g00003 240 SUPERFAMILY RING/U-box 22 89 - -
Vium8768g00003 240 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Vium8768g00003 240 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Vium8768g00003 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 105 IPR013083 -
Vium8768g00003 240 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Vium8768g00003 240 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8768g00003 Vium-Chr8768 12054 14093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8768g00003 16 226 C3H Transcription Factor Family AT4G27470 41.121 4.00e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8768g00003 K10666 - gmx:100779793 411.764