Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8765g00006 ATGAAGTATATACGGAGCAACAGCTTGAAGAGGCTTTTCTCGTTTGGAAAACGCGGGTTTGGGGAAGAAAACAATGTTGGGTTGGTGGCTCCTTCATGTGAAGAGCACCCTCTAAGACCCTCTTGGAAATGCTTCTCCTTTGAAGAGTTGTTCGATGCCACCAATGGTTTTAGCTCAGGGAATTTGGTTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGGTGAGGAAGTTGCGGTGAAGAGGCTCACCAGAACTTCAACTGATGAGAGAAAGGAGAAGGAGTTTCTGATAGAGATTGGCACAATTGGTCACGCGCGCCATGCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTCGGTTCTGTTGCTTCTGTTATTCATGATGAGAACTTGCCTCCTTTAGATTGGAGGACAAGGTACAAGATAGCTCTTGGGACCGCACGTGGTCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACGTTTTGTTAACAGCAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCACTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAATCCTCTCTGGAAGGAAACCAGTGGATGGATCTCACCAAAGCGTGCACAGCTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTGTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTATCTCAAACACATTTGTTGCTTAACTTTCCTATCACTTTCACTTTCCTCAAATCTTATGTAAAGCTTCATTTTAATCCTAAAACTATATTCTCTTTTGTTTCTCGTCAATGGAAATTTATCAGAGGATGTTTGCATTCAG 1099 0.4495 MKYIRSNSLKRLFSFGKRGFGEENNVGLVAPSCEEHPLRPSWKCFSFEELFDATNGFSSGNLVGRGGYAEVYKGTLRGGEEVAVKRLTRTSTDERKEKEFLIEIGTIGHARHANVLPLLGCCIDNGLYLVFELSTVGSVASVIHDENLPPLDWRTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNVLLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEILSGRKPVDGSHQSVHSWAKPILNKGEIEKVVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPTMSEVSQTHLLLNFPITFTFLKSYVKLHFNPKTIFSFVSRQWKFIRGCLHS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8765g00006 366 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vium8765g00006 366 ProSiteProfiles Protein kinase domain profile. 57 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8765g00006 366 SMART serkin_6 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8765g00006 366 FunFam Putative receptor-like serine/threonine-protein kinase 135 330 - -
Vium8765g00006 366 FunFam Putative receptor-like serine/threonine-protein kinase 25 133 - -
Vium8765g00006 366 Pfam Protein tyrosine and serine/threonine kinase 60 265 IPR001245 GO:0004672|GO:0006468
Vium8765g00006 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vium8765g00006 366 Gene3D Transferase(Phosphotransferase) domain 1 135 328 - -
Vium8765g00006 366 SUPERFAMILY Protein kinase-like (PK-like) 42 348 IPR011009 -
Vium8765g00006 366 Gene3D Phosphorylase Kinase; domain 1 31 133 - -
Vium8765g00006 366 PANTHER OS08G0249100 PROTEIN 34 322 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8765g00006 Vium-Chr8765 35081 37247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8765g00006 41 344 Trihelix Transcription Factor Family AT1G68690 42.492 3.65e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium8765g00006 PK_Tyr_Ser-Thr 5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8765g00006 - - gmx:100804983 617.846