Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8765g00005 ATGAAGTATATACGGAGCAACAGCTTGAAGAGGCTTTTCTCGTTTGGAAAACGCGGGTTTGGGGAAGAAAACAATGTTGGGTTGGTGGCTCCTTCATGTGAAGAGCACCCTCTAAGACCCTCTTGGAAATGCTTCTCCTTTGAAGAGTTGTTCGATGCCACCAATGGTTTTAGCTCAGGGAATTTGGTTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGGTGAGGAAGTTGCGGTGAAGAGGCTCACCAGAACTTCAACTGATGAGAGAAAGGAGAAGGAGTTTCTGATAGAGATTGGCACAATTGGTCACGCGCGCCATGCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTCGGTTCTGTTGCTTCTGTTATTCATGATCTGTTGGCTTCTGTTGCTGTATACGTCATGAAAAAGAAAAAGGAGGCTCTATCATTCCCTGTTTATACGAGACAGCGCATTTAG 519 0.4663 MKYIRSNSLKRLFSFGKRGFGEENNVGLVAPSCEEHPLRPSWKCFSFEELFDATNGFSSGNLVGRGGYAEVYKGTLRGGEEVAVKRLTRTSTDERKEKEFLIEIGTIGHARHANVLPLLGCCIDNGLYLVFELSTVGSVASVIHDLLASVAVYVMKKKKEALSFPVYTRQRI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8765g00005 172 Gene3D Phosphorylase Kinase; domain 1 31 133 - -
Vium8765g00005 172 SUPERFAMILY Protein kinase-like (PK-like) 42 146 IPR011009 -
Vium8765g00005 172 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vium8765g00005 172 Pfam Protein tyrosine and serine/threonine kinase 60 146 IPR001245 GO:0004672|GO:0006468
Vium8765g00005 172 PANTHER OS08G0249100 PROTEIN 34 145 IPR046958 -
Vium8765g00005 172 ProSiteProfiles Protein kinase domain profile. 57 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8765g00005 172 FunFam Putative receptor-like serine/threonine-protein kinase 22 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8765g00005 Vium-Chr8765 31487 35081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8765g00005 35 145 Receptor kinase-like Gene Family AT1G55610 42.857 4.33e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium8765g00005 PK_Tyr_Ser-Thr 1.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8765g00005 - - vum:124847552 347.436