Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8763g00001 ATGGCGTCAAATAGCCAATCACCGCCTCTCGAGATATTAGTTCGAGGACCCGAACAATTTTCTCTCTGGACGGGGCCACCCTTCGCCGACGGTCAACCCGCCGTCAAGCTCGAAAAAGTTAACTGCATCAATGCCAAGTTCAGCGACGATGGATCCAAGCTCATGATCACCAAATCCAACTCGTTGATTACTGTGTACGATTGCAACACTGCTAAAGAGATTAGGGCTTTTGAAGTTCCCAATGTCGTTGCCGCTACGTTGTCACCCTGTGGAACTTACTTGCAAACCTTTCAGAAACCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAAAATCGACACTGGTTCTCCTGTTTACCAACAGTCGCAAAAAAACATGACAAAAGGCAATTGGCCTGCGATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTGCAGTTTTTTGACACTGGGGATTTTTCTAAAGGAGTTACCATTCGGTTAAGAGTTCCGGGGGTTGCTGCTGCTGAGCTTTCTAGTTTACCGGGGTCCCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCAAGTGTACAGATATATGCTAGCAGAAATGCGTCTCAAAGTCAAGCTGTTGCTCGACGTAGCTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAATTATGCTATTTGACAACAGATGGAATGCATGAAGGACTTGTGCCTCTCCGGAAAGATGGACCTATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTGTATGGATTCATGCCTGCTAAAGCAACTTTGTTCGACAAGAAGTGCAATCCTCTTCTAGAGCTTGGAACTGGTCCTTACAACACTATTCGTTGGAACCCAAAAGGGAAATTTTTATGTTTGGCTGGCTTTGGTAACTTGCCCGGTGATATGGTATTCTGGGATTACATAGATAAAAAGCAACTTGGAACCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCACCAGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCCAGTAAGTTTGGTGATATTGCTGAATTAATCAAGTCTCTAAATTTGGTCCAACTTGAAGATAAAAAACCAGCAGGTCAAGGACCACCAAAGTCAACCCAGACTTCCGTAAAAGCCTCTTCTGCCAATCCCCAAGCGCAAAAGCCTGCTGCGTATCGTCCACCACATGCTAAGAATGCAGCAGCTATTCAGGCACAGTTGTTGGGAGAGACTCCTTCAGAATCAATGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCCAGTTCTTCGTAA 1557 0.4489 MASNSQSPPLEILVRGPEQFSLWTGPPFADGQPAVKLEKVNCINAKFSDDGSKLMITKSNSLITVYDCNTAKEIRAFEVPNVVAATLSPCGTYLQTFQKPSAPQEKNVTLWKIDTGSPVYQQSQKNMTKGNWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVTIRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIYASRNASQSQAVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQVDWKPESPSKFGDIAELIKSLNLVQLEDKKPAGQGPPKSTQTSVKASSANPQAQKPAAYRPPHAKNAAAIQAQLLGETPSESMSKNALRNKKKREKQKEKKAASDASSS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8763g00001 518 SUPERFAMILY DPP6 N-terminal domain-like 42 411 - -
Vium8763g00001 518 Gene3D - 196 421 IPR015943 GO:0005515
Vium8763g00001 518 FunFam Eukaryotic translation initiation factor 2A 30 185 - -
Vium8763g00001 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 10 513 IPR011387 GO:0003743|GO:0006413
Vium8763g00001 518 FunFam Eukaryotic translation initiation factor 2A 199 422 - -
Vium8763g00001 518 Coils Coil 494 514 - -
Vium8763g00001 518 Gene3D - 29 186 IPR015943 GO:0005515
Vium8763g00001 518 PIRSF Transl_init_eIF2A 4 518 IPR011387 GO:0003743|GO:0006413
Vium8763g00001 518 MobiDBLite consensus disorder prediction 437 518 - -
Vium8763g00001 518 MobiDBLite consensus disorder prediction 444 463 - -
Vium8763g00001 518 Pfam Eukaryotic translation initiation factor eIF2A 217 410 IPR013979 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8763g00001 68 418 Eukaryotic Initiation Factors Gene Family AT5G27640 23.280 3.43e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8763g00001 K15026 - gmx:100811589 954.125