Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium875g00010 ATGCCTGCAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGCCCAATCTCTCTGGAACTCATGAGAGACCCCGTCACCGTCTGCACCGGTCAAACCTACGACCGACCCAGCATCGACTCCTGGGTTTCCGCCGGTAACACCACCTGCCCCGTCACACGTGCCACTCTCACCGACTTCACCCTAATCCCCAACCACACTCTCCGCCGCCTTATCCAGGACTGGTGCGTCGCCAACCGCGCTTTCGGTGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCCGCCCTGGTTCGCTCCCTTCTCAATCAAGCATCCTCTGATTCCGCTCCAAACCACCTTCGTCTCTCCTCTCTCCGACGACTCCGACATCTCGCTCGCGACTCCGACAAGGACCGCTCTCTCATTTCCTCTCAAAACATCCGCCAGATCCTTCTCCCTATCACTTTCAACGCTGCGGACGAGTTGAAGCACGAGTCCCTCGCGCTACTCGTTTTGTTCCCCCTCGCCGAGTCCGAATGCGCCGCTCTCGCATCCGACTCCGACAAGGTTTGTTACCTCTCGCGGTTGCTCTCGCACAGCTCGCTTGAAGTCCGAGTCAACTCGGCCGCGTTGATTGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTCCGCGCGCAGGTGAGTGATGTTGACGAAATCTATGACGGAGTCGTGGACCTGCTCCGCAGCCCGATCTCGTACCCGCGCGCTCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGCTTGGTGAAGCAGACTCGGCACAAGGCGGTGTCCGCTGGTGCGCCGGCGGTACTCGTCGATAGGCTCGCGGACTTCGAGAAATGTGACGCGGAGAGGGCGCTCGCCACGGTGGAGCTACTCTGCAGGATTCCCGTGGGATGTGCCGCGTTCGCTGGCCACGCACTGACTGTGCCGATGCTGGTGAAGATAATACTGAAGATATCGGACCGCGCGACGGAGTACGCGGCCGGAGCGTTGCTGTCGTTATGCTCCGAATCGGAGCTGTGCCAGCGAGAGGCGGTGACGGCGGGGGTGTTGACCCAGCTTCTTCTTCTGGTGCAGAGCGATTGCACGGAGAGAGCCAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAGGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTCTAA 1242 0.5966 MPASLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIDSWVSAGNTTCPVTRATLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPALVRSLLNQASSDSAPNHLRLSSLRRLRHLARDSDKDRSLISSQNIRQILLPITFNAADELKHESLALLVLFPLAESECAALASDSDKVCYLSRLLSHSSLEVRVNSAALIEIVVAGTHSPELRAQVSDVDEIYDGVVDLLRSPISYPRALKIGIKALFALCLVKQTRHKAVSAGAPAVLVDRLADFEKCDAERALATVELLCRIPVGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESELCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium875g00010 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Vium875g00010 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Vium875g00010 413 Gene3D - 93 401 IPR011989 -
Vium875g00010 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Vium875g00010 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vium875g00010 413 PANTHER WDSAM1 PROTEIN 13 397 IPR045185 GO:0061630
Vium875g00010 413 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Vium875g00010 413 CDD RING-Ubox_PUB 15 67 IPR045210 -
Vium875g00010 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Vium875g00010 413 SUPERFAMILY RING/U-box 12 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium875g00010 Vium-Chr875 100299 102056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium875g00010 1 413 U-box Gene Family AT1G49780 66.194 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium875g00010 - - var:108341190 779.63