Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium875g00009 ATGTCGAATGATGATGTTGTTGATGAAAATGAGAAGAAAATTCTTACTAGTGGTGAAGAGTCCTACGATCCGGAAACTAATAATGAAATGCATCTATCCATCGAAAGAGGCCGAAGAAAGAAAATGAAAGAAATGTTCGATGATCTTAGTGCTTTACTTCCGCAACTTCCTTCAAAGGCTGATAAAGCAACCGTAGTGAACGAAGCAGTGGACTACATAAAAGTTCTGCAGGAAACTCTGGAAAAGCTAGAGAGAAAGAAAAAAGAAAGGGCACAACATGTTCTGAAACAAATTATGGGAACGAGTTCTAATGCGGGTTCAGTGTCTGAGAAGCAGAAAGGTTTTGATAAAACTTGGGCTGCTTCAAACATGGTCCTGAACATTCGTGGAAATGAAGCTCAATTCTCAATTTGCTCAGTGCATAAGCCAGGACTCATGACCAACATTGCTTCTGTGCTTGAAAAGCACAACATAGAACTCATTTCTGCAACCATTTCGGCCAATGGAAATGGAAGTACATGCATGATTCAAGTCCATGGAAAACAAGCTTCGGATGCAAATTCAATGGAGGAAACTTACAGGAAAGCTGCTGAAGAAATTATGCCATGGATCTCTTAA 618 0.3981 MSNDDVVDENEKKILTSGEESYDPETNNEMHLSIERGRRKKMKEMFDDLSALLPQLPSKADKATVVNEAVDYIKVLQETLEKLERKKKERAQHVLKQIMGTSSNAGSVSEKQKGFDKTWAASNMVLNIRGNEAQFSICSVHKPGLMTNIASVLEKHNIELISATISANGNGSTCMIQVHGKQASDANSMEETYRKAAEEIMPWIS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium875g00009 205 SMART finulus 32 82 IPR011598 GO:0046983
Vium875g00009 205 MobiDBLite consensus disorder prediction 1 31 - -
Vium875g00009 205 Pfam Helix-loop-helix DNA-binding domain 30 77 IPR011598 GO:0046983
Vium875g00009 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 89 IPR036638 GO:0046983
Vium875g00009 205 CDD bHLH_AtbHLH_like 31 84 IPR045239 -
Vium875g00009 205 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 16 204 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vium875g00009 205 Coils Coil 66 96 - -
Vium875g00009 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 76 IPR011598 GO:0046983
Vium875g00009 205 SUPERFAMILY ACT-like 133 194 IPR045865 -
Vium875g00009 205 Gene3D - 18 93 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium875g00009 Vium-Chr875 90839 96012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium875g00009 19 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.377 4.56e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium875g00009 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium875g00009 - - vum:124823917 391.734