Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium875g00008 ATGCTCTTCATGTCAGAAGATCAAAGTTTGTTGCATGATACGAACTTATTGTGGGAAAAAACGAATTCACAAAAGCAGAAGAATGAAAAGGTCGAAGGTCTCATGAATAAGAAGCGAAATCGAGAGCTCAACAAAGTTAGCAGTGCAGAAGGAAATGCTGAAAAGAGTCGCGAATCTGATCACGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAGAAAATGAAAAACATGTTCGCTAGTCTTCATGCATTGCTTCCCCATCTTCCTTCTAAGGCGGATAAATCAACGGTCGTGGATGAAGCAGTGAGCTACATCAAAAATCTTGAGACAACCCTGGAAAAGCTTGAGAAGCAGAAAGAAGAAAGGGTCCGATGTGGGCCCACGTTTTGGAATGAGTCATCACCGTCCATGTTCACTGCTCGGGGACTTTCTTCTAATTACGGCTTTTCGAACGCGATTATGGGAACTTCTTCAAACGCACTTTTATTCCCTGCACAGCAGCAGCCCGTAGCTTTTGATAAAACGTGGGCCTCTTCAAACATGGTCTTGAATGTTTGTGGAGATGAGGCCCAATTCTGCATTTGCGCGGCCCATAAACCAGGTCTCGTGTCCACCATAGTTTATGTGCTTGATAAATACAAGATAGAGCTTGTATATGCCCACATTTCGTGCCTTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGAAAACGAGCTTCACATCAGTTCCTGGATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCCGGAGAGATTCTTCTATGGATCGCTTAA 804 0.4341 MLFMSEDQSLLHDTNLLWEKTNSQKQKNEKVEGLMNKKRNRELNKVSSAEGNAEKSRESDHEMHIWTERERRKKMKNMFASLHALLPHLPSKADKSTVVDEAVSYIKNLETTLEKLEKQKEERVRCGPTFWNESSPSMFTARGLSSNYGFSNAIMGTSSNALLFPAQQQPVAFDKTWASSNMVLNVCGDEAQFCICAAHKPGLVSTIVYVLDKYKIELVYAHISCLGNGNAIMIQAHGKRASHQFLDANSVEEIYRQAAGEILLWIA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium875g00008 267 CDD bHLH_AtbHLH_like 64 117 IPR045239 -
Vium875g00008 267 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 21 266 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vium875g00008 267 MobiDBLite consensus disorder prediction 22 65 - -
Vium875g00008 267 MobiDBLite consensus disorder prediction 51 65 - -
Vium875g00008 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 122 IPR036638 GO:0046983
Vium875g00008 267 SMART finulus 67 115 IPR011598 GO:0046983
Vium875g00008 267 Coils Coil 99 126 - -
Vium875g00008 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Vium875g00008 267 Gene3D - 50 125 IPR036638 GO:0046983
Vium875g00008 267 MobiDBLite consensus disorder prediction 23 45 - -
Vium875g00008 267 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium875g00008 Vium-Chr875 86567 87782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium875g00008 60 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.235 5.80e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium875g00008 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium875g00008 - - pvu:PHAVU_003G048000g 374.785