Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium875g00007 | ATGCAAGGTCAAAGGAGAACTGTTGGATCGTTCCCAACAATTATTAGTATGATGCAAGGGCCCAGTTCTCGTGGCACTGATACAAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCTGTAGATTCCCGATTTTCAGATTATAGGGGATCTTTTGGTGAGACTGCATATTTATGTAGTACTAGTCATGATGTTCAAAGCTTCAGTTGTTGGAATTTAGGGGAATCTAGTTCTAGACTGAATCTGACCAACCAAAGCAATGGGGAAGGGCTAAAATCAGAACATGATTCGTCATCTTCATATAATGCTACTAGTGAGGATGATCTCGAGTATGAGGAAAGACAATTTGAACCAAATAGAGTAATTTTTCTTGTTAGCTCAAGCAATAACCTACATGGCAATCAATCTAGAGTTTATCCTTCCCTTTGGCAAGGCTCTAGTTCTAATCATATTACCCAATATATTAGTCCAGATATGGGGCATATTGCCCATGCTTCTGACCGTGGGAAGGGAAAAGAAGCTAGTAGTAGTGTTGATGACTATAATACTAGTGGAATAGATAGAGAAAAGACATTATTTGGCAGTGCATCATGCAATTACATAGGACCTTCATCTGAAAACTCTGGATCCATGGCTTGGGTTGAAGGTGATAGTTCAAGTTCTCTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAAGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCACGCTTGCACAATCTGAAAATGATTATTGGCCTGTTGGTCCTGCTGATCCTAATGCTTCTAGCAACTTAAGTGATGTTACAACTTTGGAGGATATTCCTGTTACCAGTCCTCGATTACTGCAGAATGTAAGAAATGAAGTGAGACAAAAAGTTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATCTAGAAAGGCCTGTAAGAAACTTCAACAGAAGAATGAGCCAACTACAGGATCAGGAATCTATACATGTCAATTTACCATCAATAGGGTGTTTTAGGCATCATAATCATTCTTCGCTGAATCAAATACCCAGCTCTCAGTCACTTAATGATTCATTGGAATTGAGGTTAATAGCTGAAGTAACAACTGCTAATTCTGGTACTTCTTTAAACCAATCACCTGCCCAACGCATCCATTCTTTTCCTTTGAGTAGAATCGCCAATCCTAGGGAGGGTAGATCTTCATTTTCTTATAACTCTGGAGATAGAGTTATTCGAGAAGATTTTAATTTGAGAGTGTTTCCCAGAGATAGTACTGAGCACCTTATGAATGCACCTGCATCTTTACAATATGAACCTACACATTGGCATACACCTTCTGGTAATGTGAACTTTTCTGAAGGTGTACCTCCTCGATCCTGGATTGGATCTAGTCCAAATGCCCACGCTTCACATAACTCTGGCTGGAATTTTAATCATGAAGTCCCAATTGAAAATGTGCACAGTGTGTCAGAATTCAATCTTTGGCCCCCTTTTCCATCAATTTGCTCTGCATCTGGTGTTCATAATGGTCATTCTACTCCATCTTCCTCTGGTCCTCCCTCGTTTACCTAGGGTTCTGGCAACAATCAATCCTATCTAAGAACAACATTGTTAACGGAAAGAAGTGGTGCTGATGTTCTCTCTAGTCCCCATTCATTGCAAGCACTAACCTTCGGCAATGAGGGGAGACGACAACTACTATCCGAGATTCGCGAGGTCTTGATGTCAATGCGAAGGGGTGAGAACTTACGAGCTGAGGATTATGCGTTATTTGACACTTTCCTATATCATGGCATGGCTGAAATACACGACAGACATAGAGAAATGCGCCTTGATGTTGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAACGTATAGGAGATGTTAGCACTGGATTGAGTGAGGATGTCATTGTTAAGTTGATGAAGCAACGACTTTACACACCACTCATGACACAGTCTTCTACAGTTTTGGAACCTTGTTGCATTTGTCAGGAGGAATTTGGTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATCTGCCCCATTTGCAAAGTAACAGCCTTAGCTACTTGA | 2145 | 0.4103 | MQGQRRTVGSFPTIISMMQGPSSRGTDTNHQSSLNHVQNAVDSRFSDYRGSFGETAYLCSTSHDVQSFSCWNLGESSSRLNLTNQSNGEGLKSEHDSSSSYNATSEDDLEYEERQFEPNRVIFLVSSSNNLHGNQSRVYPSLWQGSSSNHITQYISPDMGHIAHASDRGKGKEASSSVDDYNTSGIDREKTLFGSASCNYIGPSSENSGSMAWVEGDSSSSLVNWGPSCKRKALEGSSRQLCSGGSSSTLAQSENDYWPVGPADPNASSNLSDVTTLEDIPVTSPRLLQNVRNEVRQKVSNAFPLISIAENLERPVRNFNRRMSQLQDQESIHVNLPSIGCFRHHNHSSLNQIPSSQSLNDSLELRLIAEVTTANSGTSLNQSPAQRIHSFPLSRIANPREGRSSFSYNSGDRVIREDFNLRVFPRDSTEHLMNAPASLQYEPTHWHTPSGNVNFSEGVPPRSWIGSSPNAHASHNSGWNFNHEVPIENVHSVSEFNLWPPFPSICSASGVHNGHSTPSSSGPPSFTXGSGNNQSYLRTTLLTERSGADVLSSPHSLQALTFGNEGRRQLLSEIREVLMSMRRGENLRAEDYALFDTFLYHGMAEIHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIVKLMKQRLYTPLMTQSSTVLEPCCICQEEFGDGENVGSLDCGHEFHSACIKQWLMQKNICPICKVTALAT | 714 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium875g00007 | 714 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 630 | 712 | IPR013083 | - | |
Vium875g00007 | 714 | SMART | ring_2 | 667 | 707 | IPR001841 | - | |
Vium875g00007 | 714 | MobiDBLite | consensus disorder prediction | 162 | 183 | - | - | |
Vium875g00007 | 714 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 225 | 712 | IPR045191 | GO:0061630 | |
Vium875g00007 | 714 | FunFam | E3 ubiquitin-protein ligase MBR2 | 634 | 712 | - | - | |
Vium875g00007 | 714 | ProSiteProfiles | Zinc finger RING-type profile. | 667 | 708 | IPR001841 | - | |
Vium875g00007 | 714 | SUPERFAMILY | RING/U-box | 666 | 710 | - | - | |
Vium875g00007 | 714 | Pfam | Ring finger domain | 667 | 708 | IPR001841 | - | |
Vium875g00007 | 714 | MobiDBLite | consensus disorder prediction | 79 | 105 | - | - | |
Vium875g00007 | 714 | MobiDBLite | consensus disorder prediction | 242 | 272 | - | - | |
Vium875g00007 | 714 | Coils | Coil | 309 | 329 | - | - | |
Vium875g00007 | 714 | MobiDBLite | consensus disorder prediction | 79 | 112 | - | - | |
Vium875g00007 | 714 | MobiDBLite | consensus disorder prediction | 510 | 534 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium875g00007 | Vium-Chr875 | 73207 | 78419 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium875g00007 | 1 | 714 | C3H Transcription Factor Family | AT2G15530 | 34.595 | 1.39e-97 | 315 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium875g00007 | - | K19041 | gmx:100809024 | 1080.09 |