Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium875g00007 ATGCAAGGTCAAAGGAGAACTGTTGGATCGTTCCCAACAATTATTAGTATGATGCAAGGGCCCAGTTCTCGTGGCACTGATACAAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCTGTAGATTCCCGATTTTCAGATTATAGGGGATCTTTTGGTGAGACTGCATATTTATGTAGTACTAGTCATGATGTTCAAAGCTTCAGTTGTTGGAATTTAGGGGAATCTAGTTCTAGACTGAATCTGACCAACCAAAGCAATGGGGAAGGGCTAAAATCAGAACATGATTCGTCATCTTCATATAATGCTACTAGTGAGGATGATCTCGAGTATGAGGAAAGACAATTTGAACCAAATAGAGTAATTTTTCTTGTTAGCTCAAGCAATAACCTACATGGCAATCAATCTAGAGTTTATCCTTCCCTTTGGCAAGGCTCTAGTTCTAATCATATTACCCAATATATTAGTCCAGATATGGGGCATATTGCCCATGCTTCTGACCGTGGGAAGGGAAAAGAAGCTAGTAGTAGTGTTGATGACTATAATACTAGTGGAATAGATAGAGAAAAGACATTATTTGGCAGTGCATCATGCAATTACATAGGACCTTCATCTGAAAACTCTGGATCCATGGCTTGGGTTGAAGGTGATAGTTCAAGTTCTCTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAAGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCACGCTTGCACAATCTGAAAATGATTATTGGCCTGTTGGTCCTGCTGATCCTAATGCTTCTAGCAACTTAAGTGATGTTACAACTTTGGAGGATATTCCTGTTACCAGTCCTCGATTACTGCAGAATGTAAGAAATGAAGTGAGACAAAAAGTTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATCTAGAAAGGCCTGTAAGAAACTTCAACAGAAGAATGAGCCAACTACAGGATCAGGAATCTATACATGTCAATTTACCATCAATAGGGTGTTTTAGGCATCATAATCATTCTTCGCTGAATCAAATACCCAGCTCTCAGTCACTTAATGATTCATTGGAATTGAGGTTAATAGCTGAAGTAACAACTGCTAATTCTGGTACTTCTTTAAACCAATCACCTGCCCAACGCATCCATTCTTTTCCTTTGAGTAGAATCGCCAATCCTAGGGAGGGTAGATCTTCATTTTCTTATAACTCTGGAGATAGAGTTATTCGAGAAGATTTTAATTTGAGAGTGTTTCCCAGAGATAGTACTGAGCACCTTATGAATGCACCTGCATCTTTACAATATGAACCTACACATTGGCATACACCTTCTGGTAATGTGAACTTTTCTGAAGGTGTACCTCCTCGATCCTGGATTGGATCTAGTCCAAATGCCCACGCTTCACATAACTCTGGCTGGAATTTTAATCATGAAGTCCCAATTGAAAATGTGCACAGTGTGTCAGAATTCAATCTTTGGCCCCCTTTTCCATCAATTTGCTCTGCATCTGGTGTTCATAATGGTCATTCTACTCCATCTTCCTCTGGTCCTCCCTCGTTTACCTAGGGTTCTGGCAACAATCAATCCTATCTAAGAACAACATTGTTAACGGAAAGAAGTGGTGCTGATGTTCTCTCTAGTCCCCATTCATTGCAAGCACTAACCTTCGGCAATGAGGGGAGACGACAACTACTATCCGAGATTCGCGAGGTCTTGATGTCAATGCGAAGGGGTGAGAACTTACGAGCTGAGGATTATGCGTTATTTGACACTTTCCTATATCATGGCATGGCTGAAATACACGACAGACATAGAGAAATGCGCCTTGATGTTGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAACGTATAGGAGATGTTAGCACTGGATTGAGTGAGGATGTCATTGTTAAGTTGATGAAGCAACGACTTTACACACCACTCATGACACAGTCTTCTACAGTTTTGGAACCTTGTTGCATTTGTCAGGAGGAATTTGGTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATCTGCCCCATTTGCAAAGTAACAGCCTTAGCTACTTGA 2145 0.4103 MQGQRRTVGSFPTIISMMQGPSSRGTDTNHQSSLNHVQNAVDSRFSDYRGSFGETAYLCSTSHDVQSFSCWNLGESSSRLNLTNQSNGEGLKSEHDSSSSYNATSEDDLEYEERQFEPNRVIFLVSSSNNLHGNQSRVYPSLWQGSSSNHITQYISPDMGHIAHASDRGKGKEASSSVDDYNTSGIDREKTLFGSASCNYIGPSSENSGSMAWVEGDSSSSLVNWGPSCKRKALEGSSRQLCSGGSSSTLAQSENDYWPVGPADPNASSNLSDVTTLEDIPVTSPRLLQNVRNEVRQKVSNAFPLISIAENLERPVRNFNRRMSQLQDQESIHVNLPSIGCFRHHNHSSLNQIPSSQSLNDSLELRLIAEVTTANSGTSLNQSPAQRIHSFPLSRIANPREGRSSFSYNSGDRVIREDFNLRVFPRDSTEHLMNAPASLQYEPTHWHTPSGNVNFSEGVPPRSWIGSSPNAHASHNSGWNFNHEVPIENVHSVSEFNLWPPFPSICSASGVHNGHSTPSSSGPPSFTXGSGNNQSYLRTTLLTERSGADVLSSPHSLQALTFGNEGRRQLLSEIREVLMSMRRGENLRAEDYALFDTFLYHGMAEIHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIVKLMKQRLYTPLMTQSSTVLEPCCICQEEFGDGENVGSLDCGHEFHSACIKQWLMQKNICPICKVTALAT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium875g00007 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 712 IPR013083 -
Vium875g00007 714 SMART ring_2 667 707 IPR001841 -
Vium875g00007 714 MobiDBLite consensus disorder prediction 162 183 - -
Vium875g00007 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 225 712 IPR045191 GO:0061630
Vium875g00007 714 FunFam E3 ubiquitin-protein ligase MBR2 634 712 - -
Vium875g00007 714 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Vium875g00007 714 SUPERFAMILY RING/U-box 666 710 - -
Vium875g00007 714 Pfam Ring finger domain 667 708 IPR001841 -
Vium875g00007 714 MobiDBLite consensus disorder prediction 79 105 - -
Vium875g00007 714 MobiDBLite consensus disorder prediction 242 272 - -
Vium875g00007 714 Coils Coil 309 329 - -
Vium875g00007 714 MobiDBLite consensus disorder prediction 79 112 - -
Vium875g00007 714 MobiDBLite consensus disorder prediction 510 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium875g00007 Vium-Chr875 73207 78419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium875g00007 1 714 C3H Transcription Factor Family AT2G15530 34.595 1.39e-97 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium875g00007 - K19041 gmx:100809024 1080.09