Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8759g00014 ATGGATGTTAATCATGACGACGATGGCTTTGAGCATGATGGGGAAGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGTGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGCGTATTTAAACCTGATTCACACTTGGGTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAACCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTCGATTCAAACTTGAAGAGGCCAAAACTTGAAGATGTGTCATCACCAACCTTTATGGATAGTGTGATGACTTGCAACAATATTACTTCTGAAACCCATGGATGCAATTTAACTTTGGATTACGAGAATGGGCAATTTAATGGTAATTCCAATGACATGGATCTGGAGTCTCACTCTGATGGCTCACGTGATGCATGCAAAGAGTCTGCCAGTATAACAGAACAGAAAGGTCATCTTGATGACAATCAGATGCCCTCCGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCCGCACTAGTAAATGAAACATTGAACATATTGTTGAGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTGCGGCAGGAGATGCTGTCTGATTTGCTCGGAGGAGTTCTTCCTGCCTGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGATCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTACTGGCAGAAATCTATTCTCAAGAAGATATGGCGCCAAATATGTATGAAGTTTTGAGATTGGGAGACAAGAAAATGGAAAATGGAGGTGGTGGTGGTGATTGCGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCATAGTATTACATCTGTTCGCTATTCTGCAATAAGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTCCAGAATCTGCTATTGGAAACAAATGAAGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATTGCTGCAAGTTTTTACGGGGCTTCTTGGATTGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCAAAGATGTACTGGCCTGTTGCTTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATTTGGTATGGAATTTAGTCTTGATTCTATTAAAGGATCTATTCCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTCGGTGCTGATGTGGACACATCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTATGGAGCTCTCTAACCTCTTTCTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAAATTAAGCTCAAGAATTCGTCCAAAAACCTTGATGGTATCCCTGGTGCCGTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAACAACACAAATTGAGTTGGACCGCTTGAGTGTGGATGATGCTATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAGTTCTTGGCAAAGAACATCATGGATGATATTGAATCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGCGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCCGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTACCTTTGATGGCTTCTATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTGCGCGTAAACCTTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAGAGTATTGATGATCAGGGTCTTCTGTCTTTTAGAACTCCTGTTAGCAAACAGAAGTCAAAGGTCCATGTGCTAGCTGGTGAAGATCGTTCCAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTATAGAGGACACCAAGGAAAAGCAAGTTACTGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCCGTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACGCTTCTCCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTCAGATTAGCTGCTTCACGCTGCATCACTTCTCTGGCACAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATTCATCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGTTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTGAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACTCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGAGGCCTTCCTCAACCAATTGGACTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGTAATACAATCGGGAATGAGGATCTTCTGGCATCTTTAATTATCTGCCCATCAACTCTTGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAATATGTTGGTTCTTCTCAGGAACGAATGCTTCTTCGAGATCAGTTCTGTAAGCATAATGTCATTATAACATCATATGATGTTGTTCGTAAAGATGTTGATTTTCTGGGACAGCTACTCTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATTTTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTCTTCGATTTTCTGATGCCAGGCTTTCTCGGAACCGAGAGACAGTTCCAAGCTGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTGGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAGCAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCTGCACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTCTTCCAGGCACTCCAATATTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTTTCTCCCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATATTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCCGGTTCTGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCATCGGAAAAGCGATTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACGATTGATGTTTTACTGCTTACAACGCATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGTGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTTATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAAAAGGGTGCTAATGCTGTAAAGAGTTCAGAGAACAATTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGAGATTGAAATCGATACTTGGCGGGTTGGAGGAGCTATGGGATCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 5277 0.4125 MDVNHDDDGFEHDGEGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHLGGTLFIELEDKSIPTTLKREREIDLNMQVSADEFDSNLKRPKLEDVSSPTFMDSVMTCNNITSETHGCNLTLDYENGQFNGNSNDMDLESHSDGSRDACKESASITEQKGHLDDNQMPSGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLRMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGGVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQDQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYEVLRLGDKKMENGGGGGDCDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEIAASFYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENEFGMEFSLDSIKGSIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISWFKEIKLKNSSKNLDGIPGAVKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTTTQIELDRLSVDDAIGFASKIPALCNDSSANEFLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPIEDTKEKQVTVSIESVSDPQTLINNIQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRNTIGNEDLLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSSQERMLLRDQFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAAPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSPILLELFPAGSDIVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGANAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 1758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8759g00014 1758 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 6 1757 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vium8759g00014 1758 Pfam Domain of unknown function (DUF3535) 496 950 IPR022707 -
Vium8759g00014 1758 SMART helicmild6 1554 1640 IPR001650 -
Vium8759g00014 1758 Pfam Helicase conserved C-terminal domain 1538 1640 IPR001650 -
Vium8759g00014 1758 FunFam TATA-binding protein-associated factor BTAF1 222 402 - -
Vium8759g00014 1758 Gene3D - 1404 1722 IPR027417 -
Vium8759g00014 1758 SMART ultradead3 1158 1354 IPR014001 -
Vium8759g00014 1758 Pfam SNF2-related domain 1180 1476 IPR000330 GO:0005524|GO:0140658
Vium8759g00014 1758 MobiDBLite consensus disorder prediction 147 184 - -
Vium8759g00014 1758 Gene3D - 1134 1393 IPR038718 -
Vium8759g00014 1758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1174 1344 IPR014001 -
Vium8759g00014 1758 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1132 1393 - -
Vium8759g00014 1758 Gene3D - 210 393 IPR011989 -
Vium8759g00014 1758 FunFam TATA-binding protein-associated factor 172 1404 1721 - -
Vium8759g00014 1758 CDD SF2_C_SNF 1509 1651 - -
Vium8759g00014 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1145 1394 IPR027417 -
Vium8759g00014 1758 CDD DEXHc_Mot1 1162 1394 IPR044078 GO:0005524
Vium8759g00014 1758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1530 1686 IPR001650 -
Vium8759g00014 1758 MobiDBLite consensus disorder prediction 155 174 - -
Vium8759g00014 1758 SUPERFAMILY ARM repeat 18 1201 IPR016024 -
Vium8759g00014 1758 FunFam TATA-binding protein-associated factor BTAF1 914 1120 - -
Vium8759g00014 1758 Gene3D - 579 1120 IPR011989 -
Vium8759g00014 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1395 1696 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8759g00014 Vium-Chr8759 40982 60000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8759g00014 1157 1695 RAD5 or RAD16-like Gene Family AT1G02670 25.907 8.18e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium8759g00014 DUF3535 2.1e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8759g00014 K15192 - gmx:100777977 3104.31