Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8759g00011 ATGGCCCAGCAGTCATCTAGGCTCCAGCGCTTGCTTACTCTCCTGGATACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTAGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCGGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTGTTTTATCAAAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGATCTGTGTGCATGGCCATATTTACAATCAAAAATTACAGGAAGTGCATTCAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTACTTGCATCAGGGGGCCAGGAATATGATATTGGAAATGATAGTATAAAGAACCCAAAGGAGCGATTGGTTCGACAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGACGAAGATCTTATGGTGTCCAAATCAGACCCACATCTGAATGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAGACAAAAAGCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAGTTTGACTCCAAAAGGCACATGTCCCGATTCACTGAATTACAGTAAGGTATTCATGGATGTTAATCATGACGACGATGGCTTTGAGCATGATGGGGAAGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGTGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGCGTATTTAAACCTGATTCACACTTGGGTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAACCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTCGATTCAAACTTGAAGAGGCCAAAACTTGAAGATGTGTCATCACCAACCTTTATGGATAGTGTGATGACTTGCAACAATATTACTTCTGAAACCCATGGATGCAATTTAACTTTGGATTACGAGAATGGGCAATTTAATGGTAATTCCAATGACATGGATCTGGAGTCTCACTCTGATGGCTCACGTGATGCATGCAAAGAGTCTGCCAGTATAACAGAACAGAAAGGTCATCTTGATGACAATCAGATGCCCTCCGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCCGCACTAGTAAATGAAACATTGAACATATTGTTGAGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTGCGGCAGGAGATGCTGTCTGATTTGCTCGGAGGAGTTCTTCCTGCCTGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGATCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTACTGGCAGAAATCTATTCTCAAGAAGATATGGCGCCAAATATGTATGAAGTTTTGAGATTGGGAGACAAGAAAATGGAAAATGGAGGTGGTGGTGGTGATTGCGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCATAGTATTACATCTGTTCGCTATTCTGCAATAAGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTCCAGAATCTGCTATTGGAAACAAATGAAGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATTGCTGCAAGTTTTTACGGGGCTTCTTGGATTGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCAAAGATGTACTGGCCTGTTGCTTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATTTGGTATGGAATTTAGTCTTGATTCTATTAAAGGATCTATTCCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTCGGTGCTGATGTGGACACATCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTATGGAGCTCTCTAACCTCTTTCTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAAATTAAGCTCAAGAATTCGTCCAAAAACCTTGATGGTATCCCTGGTGCCGTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAACAACACAAATTGAGTTGGACCGCTTGAGTGTGGATGATGCTATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAGTTCTTGGCAAAGAACATCATGGATGATATTGAATCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGCGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCCGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTACCTTTGATGGCTTCTATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTGCGCGTAAACCTTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAGAGTATTGATGATCAGGGTCTTCTGTCTTTTAGAACTCCTGTTAGCAAACAGAAGTCAAAGGTCCATGTGCTAGCTGGTGAAGATCGTTCCAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTATAGAGGACACCAAGGAAAAGCAAGTTACTGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCCGTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACGCTTCTCCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTCAGATTAGCTGCTTCACGCTGCATCACTTCTCTGGCACAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATTCATCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGTTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTGAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACTCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGAGGCCTTCCTCAACCAATTGGACTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGTAATACAATCGGGAATGAGGATCTTCTGGCATCTTTAATTATCTGCCCATCAACTCTTGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAATATGTTGGTTCTTCTCAGGAACGAATGCTTCTTCGAGATCAGTTCTGTAAGCATAATGTCATTATAACATCATATGATGTTGTTCGTAAAGATGTTGATTTTCTGGGACAGCTACTCTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATTTTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTCTTCGATTTTCTGATGCCAGGCTTTCTCGGAACCGAGAGACAGTTCCAAGCTGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTGGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAGCAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCTGCACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTCTTCCAGGCACTCCAATATTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTTTCTCCCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATATTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCCGGTTCTGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCATCGGAAAAGCGATTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACGATTGATGTTTTACTGCTTACAACGCATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGTGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTTATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAAAAGGGTGCTAATGCTGTAAAGAGTTCAGAGAACAATTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGAGATTGAAATCGATACTTGGCGGGTTGGAGGAGCTATGGGATCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 6114 0.4127 MAQQSSRLQRLLTLLDTGSTQATRLTAASQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASVLSKMSENGISCSIEDLCAWPYLQSKITGSAFRSFDMNKVLEFGALLASGGQEYDIGNDSIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDPHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGGTEASGAQSLTPKGTCPDSLNYSKVFMDVNHDDDGFEHDGEGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHLGGTLFIELEDKSIPTTLKREREIDLNMQVSADEFDSNLKRPKLEDVSSPTFMDSVMTCNNITSETHGCNLTLDYENGQFNGNSNDMDLESHSDGSRDACKESASITEQKGHLDDNQMPSGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLRMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGGVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQDQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYEVLRLGDKKMENGGGGGDCDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEIAASFYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENEFGMEFSLDSIKGSIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISWFKEIKLKNSSKNLDGIPGAVKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTTTQIELDRLSVDDAIGFASKIPALCNDSSANEFLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPIEDTKEKQVTVSIESVSDPQTLINNIQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRNTIGNEDLLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSSQERMLLRDQFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAAPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSPILLELFPAGSDIVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGANAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 2037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8759g00011 2037 Gene3D - 1413 1672 IPR038718 -
Vium8759g00011 2037 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2036 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vium8759g00011 2037 Gene3D - 489 672 IPR011989 -
Vium8759g00011 2037 Pfam Domain of unknown function (DUF3535) 775 1229 IPR022707 -
Vium8759g00011 2037 MobiDBLite consensus disorder prediction 251 266 - -
Vium8759g00011 2037 Gene3D - 4 94 IPR011989 -
Vium8759g00011 2037 MobiDBLite consensus disorder prediction 245 266 - -
Vium8759g00011 2037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1424 1673 IPR027417 -
Vium8759g00011 2037 SMART ultradead3 1437 1633 IPR014001 -
Vium8759g00011 2037 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1809 1965 IPR001650 -
Vium8759g00011 2037 SUPERFAMILY ARM repeat 6 1480 IPR016024 -
Vium8759g00011 2037 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1453 1623 IPR014001 -
Vium8759g00011 2037 Gene3D - 1683 2001 IPR027417 -
Vium8759g00011 2037 CDD SF2_C_SNF 1788 1930 - -
Vium8759g00011 2037 FunFam TATA-binding protein-associated factor BTAF1 1193 1399 - -
Vium8759g00011 2037 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Vium8759g00011 2037 Pfam SNF2-related domain 1459 1755 IPR000330 GO:0005524|GO:0140658
Vium8759g00011 2037 FunFam TATA-binding protein-associated factor BTAF1 501 681 - -
Vium8759g00011 2037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1674 1975 IPR027417 -
Vium8759g00011 2037 MobiDBLite consensus disorder prediction 426 463 - -
Vium8759g00011 2037 SMART helicmild6 1833 1919 IPR001650 -
Vium8759g00011 2037 Pfam Helicase conserved C-terminal domain 1817 1919 IPR001650 -
Vium8759g00011 2037 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1411 1672 - -
Vium8759g00011 2037 Gene3D - 1199 1399 IPR011989 -
Vium8759g00011 2037 FunFam TATA-binding protein-associated factor 172 1683 2000 - -
Vium8759g00011 2037 CDD DEXHc_Mot1 1441 1673 IPR044078 GO:0005524
Vium8759g00011 2037 MobiDBLite consensus disorder prediction 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8759g00011 Vium-Chr8759 40982 64975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8759g00011 1436 1974 RAD5 or RAD16-like Gene Family AT1G02670 25.907 8.38e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium8759g00011 DUF3535 2.8e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8759g00011 K15192 - gmx:100777977 3614.31