LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8759g00009	ATGGCAGCTTTACTCCTTAATCGCTCCTTCTTCTGCCACCTATTCCTTTTCCTTTTTTGTTGTATTCCATCTATAAACACACTCTCCACTGTTTCCATTTCTCAAACCCCCCATTCAAACCAAACATTTATTTGCGTCTTGCAACATCCAAATCAACAAGGACAATCAAATCTCAACTGTACTACCTTTCCTCGGACTCAGACTCCGCCTTTTACGCTTGATGTCAATCCTAACGTTACCTACTCTCAGATTGTGGGCGGCAACGGCTTTGTATGTGCTTTGGGGCCATCGTCTTCTTCCATCTCCATCATGGGGTGCTGGAGATTCTCTGCCAATGCTACTAATGTTCCCTATAAGCGCATCTACGATGGACCCCTTCTCCAAGATATTGACAGTAGCCACTCCCACGTTTGCGGTCTTGTAAATAATGGTAGTAGTAGCCTTAAGCTTGAGTGTTGGCAATGGCACGACTTCAATTCGAGCAGTGGGAGTGTGAGGAACATGTCAATGTCAAGCATGGCCGTGGGAGAGAATTTTGTGTGTGGCTTATCACCGACGGGGGATGTTAATTGCACAGGCACGGGGAGGGTTAGTAGTAGTAGACTTGTTGTTGATGTTCCTGCGCCCGGCGGGAATTACAGTTTTCTCGCAGCTGGCTTTAGGCATGCCTGTGTTATCTCCGGTGATGGTGGTTTGGTTTGTTGGGGAGACATGGAAGGTGAGAAGCCTCAAGGGAGGTTCGTTTCTATGGCGTTGGGAGAGAACCGTAGCTGCGCACTCGGACATGACAGAAGAGTTGTCTGTTGGGGGTCCGATAATTTCACCATGCCGACCACCTTGCAAGACACTTTTTTTGAGTCAATCGTGGCAGAGAAAAGCGTTTTCTGTGGTGTTGTATCTTCCAATTTTTCCTTGCTCTGTTGGGGTTCTCCATTTTTTGAATCAGACAGCAAGGTGTTTGAAGATGTCCTCCCTGGACCTTGTCGGAAAAATTGCCCTTGTGGGCCCTTGCCCAACTCTGCCAAACTATGTCAGTCTCCAGACGTCATTTGCCAACCCTGTTACCCTCAAGTGGTTCAGTCTTCGTCTCCACCTCCATCTCCACCTCCATCACCATCACCATCACAGCCATCGCTACCATCAAATCACTCTCGTTGGAGCAGCCGAATGGTTGCATTTCTTGTGGTTGGATGTGTGGGGTGCAGTTCCCTGTTGCTAGTCATAGCTTTCTTCCTTCACAGGTACTGCAAGTCTAAACGCAGAGGAAGCCGTGTCCATGATTCTGGCCGGTTGGATGAGTCATCCCACTCTCAACCACAACCTGACGCTGAAGCTGGATCTCGTGTTCTTCAGAAGCGCTTGAGTCACGTGATCAGCATGGGAAATGGGAGCCCTTTGGAGGAGTTTTCTCTGGGGACACTGCTTCAAGTCACTAACAATTTCTCTGAGGAGAAGAGAGTTGGAGTTGGCAGCTTCGGTTCAGTGTATCGTGCCACTTTGGAGGACGGCAAGGAGGTTGCTATAAAAAGAGCCGAAGCTTCATCCTCCACCTACACAGTCTTGGGTGCCCAAGTGGACAAAGACAATGCTTTCATGAATGAGCTAGAATCTCTCTCCAGACTCCACCACAAGAACCTGGTCCGCTTGGTGGGGTTCTACGAAGACACTAAAGAACGCATTTTGGTGTATGAGTACATGGACAATGGGAGCCTCGGTGACCATCTCCACAAGCTCCAAACTTCAGCTCTAATGTCATGGCCGGTGCGCATCAAGGTGGCTCTGGATGCTGCCAGAGGCATAGAGTACTTACACCAATACGCCACTCCTCCGATCATTCACCGTGACATCAAGTCTGCAAACATATTATTGGATGCCAAGTGGACTGCCAAAGTCTCTGATTTTGGACTCTCCCTAATGGGACCTGATCCTGAAGATGAGGAGGCTCACCTTTCACTTCTAGCAGCTGGCACTGTTGGCTACATGGACCCTGAATACTACAGGCTTCAACATTTGACCCCCAAGAGTGACGTCTACAGCTTTGGAGTGGTTTTGCTGGAGTTGCTCTCAGGATACAGGGCCATCCATAAAAACGAGAATGGGGTGCCAAGAAATGTGGTTGATTTTGTAGTGCCATTCATTTATCAAGATGAGATTCACAGAGTGTTGGACAAAAGAGTGCCCCCTCCCACGCCGTTTGAGATAGAGGCTGTGGCGTTTGTCGGTTATTTGGCAGCAGATTGTGTCAGGCTGGAAGGTCGTGACAGACCAACGATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCACAACCTACACTCTCTAGGTCCACCACATACTCTTCTTCGCATTAG	2367	0.4858	MAALLLNRSFFCHLFLFLFCCIPSINTLSTVSISQTPHSNQTFICVLQHPNQQGQSNLNCTTFPRTQTPPFTLDVNPNVTYSQIVGGNGFVCALGPSSSSISIMGCWRFSANATNVPYKRIYDGPLLQDIDSSHSHVCGLVNNGSSSLKLECWQWHDFNSSSGSVRNMSMSSMAVGENFVCGLSPTGDVNCTGTGRVSSSRLVVDVPAPGGNYSFLAAGFRHACVISGDGGLVCWGDMEGEKPQGRFVSMALGENRSCALGHDRRVVCWGSDNFTMPTTLQDTFFESIVAEKSVFCGVVSSNFSLLCWGSPFFESDSKVFEDVLPGPCRKNCPCGPLPNSAKLCQSPDVICQPCYPQVVQSSSPPPSPPPSPSPSQPSLPSNHSRWSSRMVAFLVVGCVGCSSLLLVIAFFLHRYCKSKRRGSRVHDSGRLDESSHSQPQPDAEAGSRVLQKRLSHVISMGNGSPLEEFSLGTLLQVTNNFSEEKRVGVGSFGSVYRATLEDGKEVAIKRAEASSSTYTVLGAQVDKDNAFMNELESLSRLHHKNLVRLVGFYEDTKERILVYEYMDNGSLGDHLHKLQTSALMSWPVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYRAIHKNENGVPRNVVDFVVPFIYQDEIHRVLDKRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPTLSRSTTYSSSH	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8759g00009	788	SMART	serkin_6	481	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8759g00009	788	MobiDBLite	consensus disorder prediction	362	382	-	-
	Vium8759g00009	788	SUPERFAMILY	RCC1/BLIP-II	84	312	IPR009091	-
	Vium8759g00009	788	MobiDBLite	consensus disorder prediction	362	377	-	-
	Vium8759g00009	788	FunFam	Serine/threonine-protein kinase-like protein CCR4	566	784	-	-
	Vium8759g00009	788	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	161	775	IPR044815	GO:0004674
	Vium8759g00009	788	Gene3D	Phosphorylase Kinase; domain 1	443	565	-	-
	Vium8759g00009	788	MobiDBLite	consensus disorder prediction	423	448	-	-
	Vium8759g00009	788	ProSitePatterns	Protein kinases ATP-binding region signature.	487	509	IPR017441	GO:0005524
	Vium8759g00009	788	SUPERFAMILY	Protein kinase-like (PK-like)	456	765	IPR011009	-
	Vium8759g00009	788	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	611	623	IPR008271	GO:0004672\|GO:0006468
	Vium8759g00009	788	Gene3D	Transferase(Phosphotransferase) domain 1	566	777	-	-
	Vium8759g00009	788	Gene3D	-	201	318	IPR009091	-
	Vium8759g00009	788	ProSiteProfiles	Protein kinase domain profile.	481	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8759g00009	788	Pfam	Regulator of chromosome condensation (RCC1) repeat	216	237	-	-
	Vium8759g00009	788	Pfam	Protein kinase domain	482	763	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8759g00009	788	CDD	STKc_IRAK	487	767	-	-
	Vium8759g00009	788	Gene3D	-	48	200	IPR009091	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8759g00009	Vium-Chr8759	32245	34931	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8759g00009	27	784	Receptor kinase-like Gene Family	AT5G47850	49.292	0.0	684

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Vium8759g00009		Pkinase	1.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8759g00009	-		-	pvu:PHAVU_011G003100g	1419.06