Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8759g00007 ATGGCCAAGAGCCCCTGTCTCTTATCCTTTTTCCAGTTATTGGCAGTGCTCTTTCTCACCTTCTACTCTATTTTCCCGCCTTGTGTGTCTCAGACGTCGGAAAGCCACGCTCTTTTTCAGTTCAAGAACCATTTGAAGGACTCCTTGAATTATTTGGCTTCCTGGAATGAATCAGATTCTCCATGTGACTTTTATGGAATTACATGTGATCAAGTTTCTGGGAGAGTCACAGAAATCTCACTGGACAATAAGTCCCTCTCTGGTGTCATTTTCCCATCACTCTCAGTTTTGCAGAGCCTGCAAGTTCTCTCACTACCGTCAAATTTAATTTCCGGAAAGCTTCCAGCAGAAATAAGCAGGTGTACCAGCCTCAGAGTGTTGAATCTAACAGGAAATCAATTGATGGGACCAATCCCAGACTTGTCTGGGCTGAGAAACCTGCAAATTCTTGACCTTTCAGCAAACTACTTGTCTGGAAGCATCCCTAGCTGGGTGGGGAATCTAACCGGACTGGTTTCACTGGGTCTTGGGGAAAATGCATACAATGAAGGTGAGATTCCAGGGACTCTTGGAAATCTGAAGAACTTGACATGGCTTTATCTTGGTGGCTCCCATTTGGTAGGAGAGATTCCAGAATCACTGTATGAAATGAAGGCATTGGAGACACTGGATATGTCAAGAAACAAAATCTCTGGAAGACTATCCAGATCAATTTCAAAGTTAGAGAATCTTTACAAGATTGAGCTCTTCTCAAATAATTTGACAGGAGAGGTTCCAGCACAGCTTGCAAACCTCACCAATCTGCGGGAGATTGACCTTTCTGCAAACAACATGTATGGTAGGTTGCCAGAGGAAATTGGGAATATGAAGAACTTGGTTGTTTTTCAATTATATGAAAACAGATTTTCTGGAGAACTTCCTGTAGGATTTGCAGATATGCGCCATCTCATTGGGTTCTCAATATATAGAAACAACTTCACTGGGACAATTCCAGAAAATTTTGGCCGTTTTTCAGAACTTGAAAGTATTGACATATCTGAGAATCAATTTGCAGGCGATTTCCCAAAGTTCTTGTGTGAAAGAAGTAAGTTGAGGTTTTTGCTTGCATTGCAAAACAATTTCTCAGGGACTTTTCCGGAGTCTTATGCTACATGTAAATCTATGGAGAGATTTAGGATCAGTATGAACCAGTTATCTGGGAAAATTCCAGATGAGGTTTGGGCACTTCCGTATGTAAAGATAATTGATTTGGCGTATAATGATTTCACTGGTGTTGTTCCTTCAGAAATTGGGTTGTCTACTAGCTTAAATCAGGTAGTTTTGACAAAAAACAGGTTTTCAGGTAAGCTCCCATCAGAACTTGGCAAGCTGGTGAACTTGGAGAAGCTTTACTTGAGCAGCAACAATTTCTCTGGTGAAATACCGCCTGAAATTGGATCTCTGAAGCAGTTATCCTCTTTGCATGTAGAAGTGAATTCCTTAACTGGTTCAATTCCACCAGAACTGGGTAATTGTGCAAGACTAGTGGACTTGAATCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAATTTCTCTTATGAGCTCATTGAACTCTCTTAACATATCTGGAAACAAACTTGAAGGTTCTATTCCAGATAGTTTAGAAGCCATAAAGTTAAGCTCGGTGGATTTTTCTGAAAACCTGCTTTCTGGAAGAATCCCATCTGGTCTTTTTATTGTTGGAGGAGAGAAAGCTTTTATTGGAAACAAGGGGCTGTGTTTCGAGGGAAAACTAAAACCTTCCCTGAATTCTGATCTGAAGATTTGCGCCAAAAGCCATGATCAGCCAAGGGTTCCTGCTAATAAATTTGTCTTTATCTTTCTCATTGCTTCTACTTTTGTTGTTATTTTAGCTGGTTTGCTGCTTTTGAGTTGTAGAAGCCTCAAGCATGGTGCACAAAATAGCATGCAACGTCAGAAGGAAATAAGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATCGATGCTGATGAAATATGTAATCTGGATGAAGATAATTTGATAGGTAGTGGTGGCACAGGAAAGGTTTATCGAGTGGAATTGAGGAAAAATAGAGCCATGGTGGCTGTCAAGCAACTAGGGAAAATAGATGGTGTGAAAATTTTAGCTGCAGAGATGGAGATTTTGGGGAAAATTAGGCATAGAAATATACTTAAACTCTATGCTTCTTTACTTAAAGGAGGATCCAACCTTTTAGTGTTGGAGTACATGCCAAATGGTAATCTATTTCAAGCTCTCCATGGACAGATAAAAGATGGGAAGCCAGACTTGGACTGGAAACAGAGGTATAAAATTGCTCTGGGAGCTGCAAAAGGAATTGCTTATTTACACCATGACTGTAATCCGCCTATTATTCATAGGGATATAAAATCCAGCAACATTTTGCTTGACGATGATTATGAGCCAAAAATTGCTGATTTTGGTATTGCAAGGTTTGCAGAAAAATCTGATAAGCAGTTGGGATATAGCTGTCTGGCTGGCACACTTGGTTATATTGCTCCAGAACTTGCTTATGCCACTGACATCACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGGTACTGTTAGAATTAGTGACAGGCAGAGAACCAATTGAAGAGGATTATGGAGAGGCAAAGGATATTGTTTATTGGGTTTTGACTCATCTGAATGACCGTGAAAGTATTCTCAACATTCTTGATGAAAGGGTGGCATCTGAGTCTGTTGAAGATATGATGAAAGTGTTGAAGATTGGCATCAAGTGCACCACTAAGCTTCCTTCTGTGCGTCCCACCATGAGAGAGGTTGTTAAGATGCTAATCGATGCAGAACCTTGTGCTTTGAAATCTCCAAAATGCCGTCATCACAAGGACACAAATGCCCTTCTCTGA 2925 0.4041 MAKSPCLLSFFQLLAVLFLTFYSIFPPCVSQTSESHALFQFKNHLKDSLNYLASWNESDSPCDFYGITCDQVSGRVTEISLDNKSLSGVIFPSLSVLQSLQVLSLPSNLISGKLPAEISRCTSLRVLNLTGNQLMGPIPDLSGLRNLQILDLSANYLSGSIPSWVGNLTGLVSLGLGENAYNEGEIPGTLGNLKNLTWLYLGGSHLVGEIPESLYEMKALETLDMSRNKISGRLSRSISKLENLYKIELFSNNLTGEVPAQLANLTNLREIDLSANNMYGRLPEEIGNMKNLVVFQLYENRFSGELPVGFADMRHLIGFSIYRNNFTGTIPENFGRFSELESIDISENQFAGDFPKFLCERSKLRFLLALQNNFSGTFPESYATCKSMERFRISMNQLSGKIPDEVWALPYVKIIDLAYNDFTGVVPSEIGLSTSLNQVVLTKNRFSGKLPSELGKLVNLEKLYLSSNNFSGEIPPEIGSLKQLSSLHVEVNSLTGSIPPELGNCARLVDLNLAWNSLSGNIPQSISLMSSLNSLNISGNKLEGSIPDSLEAIKLSSVDFSENLLSGRIPSGLFIVGGEKAFIGNKGLCFEGKLKPSLNSDLKICAKSHDQPRVPANKFVFIFLIASTFVVILAGLLLLSCRSLKHGAQNSMQRQKEISQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGKVYRVELRKNRAMVAVKQLGKIDGVKILAAEMEILGKIRHRNILKLYASLLKGGSNLLVLEYMPNGNLFQALHGQIKDGKPDLDWKQRYKIALGAAKGIAYLHHDCNPPIIHRDIKSSNILLDDDYEPKIADFGIARFAEKSDKQLGYSCLAGTLGYIAPELAYATDITEKSDVYSFGVVLLELVTGREPIEEDYGEAKDIVYWVLTHLNDRESILNILDERVASESVEDMMKVLKIGIKCTTKLPSVRPTMREVVKMLIDAEPCALKSPKCRHHKDTNALL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8759g00007 974 SMART LRR_typ_2 217 241 IPR003591 -
Vium8759g00007 974 SMART LRR_typ_2 265 289 IPR003591 -
Vium8759g00007 974 SMART LRR_typ_2 457 481 IPR003591 -
Vium8759g00007 974 SMART LRR_typ_2 144 168 IPR003591 -
Vium8759g00007 974 SMART LRR_typ_2 529 552 IPR003591 -
Vium8759g00007 974 SMART LRR_typ_2 97 121 IPR003591 -
Vium8759g00007 974 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 755 968 - -
Vium8759g00007 974 SUPERFAMILY L domain-like 58 377 - -
Vium8759g00007 974 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Vium8759g00007 974 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Vium8759g00007 974 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Vium8759g00007 974 Gene3D Phosphorylase Kinase; domain 1 661 754 - -
Vium8759g00007 974 SUPERFAMILY Protein kinase-like (PK-like) 676 951 IPR011009 -
Vium8759g00007 974 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Vium8759g00007 974 Pfam Leucine rich repeat 76 134 IPR001611 GO:0005515
Vium8759g00007 974 Gene3D Ribonuclease Inhibitor 243 313 IPR032675 -
Vium8759g00007 974 Gene3D Ribonuclease Inhibitor 183 242 IPR032675 -
Vium8759g00007 974 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vium8759g00007 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Vium8759g00007 974 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Vium8759g00007 974 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Vium8759g00007 974 FunFam Probable inactive receptor kinase RLK902 31 184 - -
Vium8759g00007 974 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8759g00007 974 Pfam Protein kinase domain 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8759g00007 974 CDD STKc_IRAK 686 951 - -
Vium8759g00007 974 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Vium8759g00007 974 Gene3D Ribonuclease Inhibitor 314 597 IPR032675 -
Vium8759g00007 974 Gene3D Transferase(Phosphotransferase) domain 1 755 966 - -
Vium8759g00007 974 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 280 952 - -
Vium8759g00007 974 ProSiteProfiles Protein kinase domain profile. 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8759g00007 974 FunFam Receptor-like protein kinase HSL1 291 597 - -
Vium8759g00007 974 SUPERFAMILY L domain-like 297 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8759g00007 Vium-Chr8759 26619 32150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8759g00007 1 961 Receptor kinase-like Gene Family AT1G72180 56.423 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium8759g00007 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8759g00007 - - gmx:100789704 1665.2